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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261808 through 18771 annotations produced 1 hits



():

Annotation Number : CG31299
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037872
Gbrowse : chr3R:7026137-7034357 (+) // 100.0 //
Probeset : 1636103_a_at
Accessions : protein= NP_001097745; /// NP_001097746; /// NP_001097747;, nucleotide= NM_001104275; /// NM_001104276; /// NM_001104277;
FlyMine data for FBgn0037872.
BioGrid reports that CG31299 interacts with CG3613 CG6985 CG8173 .
VDRC has 5 RNAi stocks for FBgn0037872 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain407 ± 134 of 4 1.40Up
Head414 ± 174 of 4 1.50Up
Eye239 ± 344 of 4 0.85None
Thoracicoabdominal ganglion313 ± 94 of 4 1.10None
Salivary gland530 ± 294 of 4 1.88Up
Crop138 ± 14 of 4 0.50Down
Midgut189 ± 84 of 4 0.70Down
Tubule966 ± 604 of 4 3.40Up
Hindgut219 ± 44 of 4 0.80Down
Heart660 ± 544 of 4 2.34Up
Fat body900 ± 824 of 4 3.19Up
Ovary269 ± 24 of 4 1.00None
Testis43 ± 24 of 4 0.20Down
Male accessory glands116 ± 44 of 4 0.40Down
Virgin spermatheca1423 ± 434 of 4 5.04Up
Mated spermatheca980 ± 824 of 4 3.47Up
Adult carcass738 ± 304 of 4 2.60Up
Larval CNS94 ± 364 of 4 0.34Down
Larval Salivary gland39 ± 44 of 4 0.14Down
Larval midgut219 ± 134 of 4 0.78Down
Larval tubule103 ± 34 of 4 0.40Down
Larval hindgut110 ± 164 of 4 0.39Down
Larval fat body153 ± 134 of 4 0.50Down
Larval trachea52 ± 54 of 4 0.19Down
Larval carcass264 ± 214 of 4 0.94None
S2 cells (growing)149 ± 124 of 4 0.53Down
Whole fly282 ± 124 of 4

Looking for FBgn0261808. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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