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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261813 through 18771 annotations produced 2 hits



():

Annotation Number : HDC09604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:11377017-11380076 (-) // 100.0 //
Probeset : 1639373_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.70None
Head2 ± 00 of 4 0.40Down
Eye4 ± 00 of 4 0.73None
Thoracicoabdominal ganglion2 ± 10 of 4 0.40Down
Salivary gland12 ± 30 of 4 2.02None
Crop3 ± 10 of 4 0.50None
Midgut6 ± 10 of 4 1.00None
Tubule3 ± 00 of 4 0.60Down
Hindgut3 ± 11 of 4 0.60None
Heart8 ± 00 of 4 1.31None
Fat body7 ± 10 of 4 1.18None
Ovary4 ± 10 of 4 0.70None
Testis4 ± 00 of 4 0.70Down
Male accessory glands7 ± 10 of 4 1.30None
Virgin spermatheca5 ± 10 of 4 0.95None
Mated spermatheca4 ± 11 of 4 0.72None
Adult carcass2 ± 10 of 4 0.40Down
Larval CNS4 ± 11 of 4 0.65Down
Larval Salivary gland4 ± 20 of 4 0.73None
Larval midgut8 ± 02 of 4 1.30None
Larval tubule4 ± 00 of 4 0.60Down
Larval hindgut3 ± 10 of 4 0.55None
Larval fat body5 ± 20 of 4 0.80None
Larval trachea5 ± 20 of 4 0.90None
Larval carcass4 ± 10 of 4 0.73None
S2 cells (growing)2 ± 01 of 4 0.43Down
Whole fly6 ± 00 of 4



():

Annotation Number : HDC09603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:11376397-11376706 (-) // 100.0 //
Probeset : 1629416_s_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.30None
Head4 ± 10 of 4 1.70None
Eye2 ± 10 of 4 0.94None
Thoracicoabdominal ganglion2 ± 00 of 4 0.70None
Salivary gland4 ± 31 of 4 1.61None
Crop4 ± 20 of 4 1.60None
Midgut5 ± 10 of 4 1.80None
Tubule4 ± 10 of 4 1.60None
Hindgut3 ± 10 of 4 1.30None
Heart1 ± 10 of 4 0.56None
Fat body6 ± 31 of 4 2.36None
Ovary1 ± 10 of 4 0.60None
Testis2 ± 00 of 4 0.70None
Male accessory glands9 ± 20 of 4 3.40None
Virgin spermatheca7 ± 13 of 4 2.69Up
Mated spermatheca9 ± 24 of 4 3.46None
Adult carcass10 ± 40 of 4 3.60None
Larval CNS4 ± 21 of 4 1.70None
Larval Salivary gland3 ± 10 of 4 1.09None
Larval midgut6 ± 30 of 4 2.19None
Larval tubule4 ± 00 of 4 1.60None
Larval hindgut5 ± 00 of 4 2.05Up
Larval fat body6 ± 21 of 4 2.20None
Larval trachea3 ± 00 of 4 1.27None
Larval carcass1 ± 00 of 4 0.61None
S2 cells (growing)3 ± 10 of 4 1.28None
Whole fly2 ± 00 of 4

Looking for FBgn0261813. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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