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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261822 through 18771 annotations produced 2 hits



():

Annotation Number : CG31605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011219
Gbrowse : chr2L:8102799-8110540 (+) // 99.66 //
Probeset : 1640457_s_at
Accessions : protein= NP_723338; /// NP_723339; /// NP_723340; /// NP_723341; /// NP_723342; /// NP_723343; /// NP_723344; /// NP_723345; /// NP_723346;, nucleotide= NM_164782; /// NM_164783; /// NM_164784; /// NM_164785; /// NM_164786; /// NM_164787; /// NM_164788; /// NM_164789; /// NM_164790;
FlyMine data for FBgn0011219.
Homophila reports that CG31605 is a close match (7e-11) to human gene BSG (NP_940993), a gene associated with [Blood group, OK], 111380 (3).
VDRC has 4 RNAi stocks for FBgn0011219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain343 194 of 4 1.70Up
Head192 284 of 4 1.00None
Eye633 584 of 4 3.17Up
Thoracicoabdominal ganglion345 394 of 4 1.70Up
Salivary gland183 204 of 4 0.92None
Crop293 284 of 4 1.50None
Midgut379 84 of 4 1.90Up
Tubule96 74 of 4 0.50Down
Hindgut479 124 of 4 2.40Up
Heart459 374 of 4 2.30Up
Fat body207 764 of 4 1.04None
Ovary143 104 of 4 0.70None
Testis53 14 of 4 0.30Down
Male accessory glands53 44 of 4 0.30Down
Virgin spermatheca37 44 of 4 0.19Down
Mated spermatheca54 24 of 4 0.27Down
Adult carcass304 324 of 4 1.50Up
Larval CNS87 164 of 4 0.44Down
Larval Salivary gland103 94 of 4 0.52Down
Larval midgut147 114 of 4 0.74None
Larval tubule337 164 of 4 1.70Up
Larval hindgut229 214 of 4 1.15None
Larval fat body768 574 of 4 3.80Up
Larval trachea246 204 of 4 1.23None
Larval carcass107 184 of 4 0.54Down
S2 cells (growing)464 184 of 4 2.32Up
Whole fly199 244 of 4



():

Annotation Number : CG31605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011219
Gbrowse : chr2L:8083421-8109458 (+) // 100.0 //
Probeset : 1628276_s_at
Accessions : protein= NP_723338; /// NP_723339; /// NP_723340; /// NP_723341; /// NP_723342; /// NP_723343; /// NP_723344; /// NP_723345; /// NP_723346;, nucleotide= NM_164782; /// NM_164783; /// NM_164784; /// NM_164785; /// NM_164786; /// NM_164787; /// NM_164788; /// NM_164789; /// NM_164790;
FlyMine data for FBgn0011219.
Homophila reports that CG31605 is a close match (7e-11) to human gene BSG (NP_940993), a gene associated with [Blood group, OK], 111380 (3).
VDRC has 4 RNAi stocks for FBgn0011219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain317 144 of 4 0.80Down
Head492 174 of 4 1.20Up
Eye293 174 of 4 0.70Down
Thoracicoabdominal ganglion332 124 of 4 0.80Down
Salivary gland801 394 of 4 1.92Up
Crop852 34 of 4 2.00Up
Midgut1157 434 of 4 2.80Up
Tubule1103 934 of 4 2.60Up
Hindgut1270 384 of 4 3.00Up
Heart798 244 of 4 1.91Up
Fat body1860 954 of 4 4.46Up
Ovary326 54 of 4 0.80Down
Testis123 64 of 4 0.30Down
Male accessory glands222 54 of 4 0.50Down
Virgin spermatheca1184 614 of 4 2.84Up
Mated spermatheca1265 414 of 4 3.03Up
Adult carcass774 364 of 4 1.90Up
Larval CNS392 334 of 4 0.94None
Larval Salivary gland785 624 of 4 1.88Up
Larval midgut1735 154 of 4 4.16Up
Larval tubule960 424 of 4 2.30Up
Larval hindgut1808 314 of 4 4.34Up
Larval fat body1650 1514 of 4 4.00Up
Larval trachea524 714 of 4 1.26None
Larval carcass887 224 of 4 2.13Up
S2 cells (growing)996 354 of 4 2.39Up
Whole fly417 234 of 4

Looking for FBgn0261822. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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