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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261823 through 18771 annotations produced 1 hits



():

Annotation Number : CG8787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000142
Gbrowse : chr2R:10391513-10399951 (+) // 100.0 //
Probeset : 1628901_at
Accessions : protein= NP_001014527; /// NP_725398;, nucleotide= NM_001014527; /// NM_166057;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 003
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016563 // transcription activator activity // non-
FlyMine data for FBgn0000142.
BioGrid reports that CG8787 interacts with CG6502 CG6502 CG4264 CG32443 CG32443 CG5942 CG5942 CG4637 CG12058 CG6586 CG8651 CG8651 CG2759 CG2759 .
VDRC has 1 RNAi stocks for FBgn0000142 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain344 84 of 4 3.10Up
Head111 44 of 4 1.00None
Eye114 64 of 4 1.03None
Thoracicoabdominal ganglion229 44 of 4 2.10Up
Salivary gland122 74 of 4 1.10None
Crop132 34 of 4 1.20None
Midgut92 24 of 4 0.80None
Tubule71 34 of 4 0.60Down
Hindgut110 34 of 4 1.00None
Heart72 34 of 4 0.65Down
Fat body126 134 of 4 1.14None
Ovary529 124 of 4 4.80Up
Testis27 24 of 4 0.20Down
Male accessory glands115 64 of 4 1.00None
Virgin spermatheca108 124 of 4 0.98None
Mated spermatheca93 44 of 4 0.84None
Adult carcass82 34 of 4 0.70None
Larval CNS325 264 of 4 2.94Up
Larval Salivary gland117 84 of 4 1.06None
Larval midgut102 104 of 4 0.92None
Larval tubule117 54 of 4 1.10None
Larval hindgut114 74 of 4 1.03None
Larval fat body89 04 of 4 0.80None
Larval trachea131 74 of 4 1.18None
Larval carcass121 64 of 4 1.10None
S2 cells (growing)87 24 of 4 0.79None
Whole fly111 104 of 4

Looking for FBgn0261823. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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