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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261836 through 18771 annotations produced 6 hits



():

Annotation Number : HDC00871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5109145-5111039 (+) // 100.0 //
Probeset : 1641717_s_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 3.80Up
Head8 20 of 4 1.60None
Eye8 21 of 4 1.66None
Thoracicoabdominal ganglion20 14 of 4 4.00Up
Salivary gland10 40 of 4 2.14None
Crop35 34 of 4 7.10Up
Midgut13 30 of 4 2.80None
Tubule12 10 of 4 2.60Up
Hindgut20 22 of 4 4.20Up
Heart7 00 of 4 1.48None
Fat body7 50 of 4 1.48None
Ovary4 10 of 4 1.00None
Testis1 00 of 4 0.30Down
Male accessory glands3 00 of 4 0.70None
Virgin spermatheca8 20 of 4 1.65None
Mated spermatheca8 20 of 4 1.69None
Adult carcass17 40 of 4 3.50None
Larval CNS9 13 of 4 1.86Up
Larval Salivary gland12 20 of 4 2.41Up
Larval midgut11 21 of 4 2.30Up
Larval tubule12 10 of 4 2.50Up
Larval hindgut19 32 of 4 3.97Up
Larval fat body15 20 of 4 3.10Up
Larval trachea17 42 of 4 3.59Up
Larval carcass8 20 of 4 1.78None
S2 cells (growing)3 20 of 4 0.72None
Whole fly5 10 of 4



():

Annotation Number : CG14035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031685
Gbrowse : chr2L:5102797-5104074 (+) // 100.0 //
Probeset : 1638426_at
Accessions : protein= NP_608910;, nucleotide= NM_135066;
FlyMine data for FBgn0031685.
VDRC has 7 RNAi stocks for FBgn0031685 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.70None
Head1 00 of 4 1.80None
Eye1 00 of 4 2.03None
Thoracicoabdominal ganglion1 00 of 4 2.50None
Salivary gland7 60 of 410.17None
Crop2 10 of 4 2.70None
Midgut0 00 of 4 1.10None
Tubule1 00 of 4 1.40Up
Hindgut1 00 of 4 2.10None
Heart1 00 of 4 2.60None
Fat body1 10 of 4 2.43None
Ovary0 00 of 4 0.90None
Testis0 00 of 4 0.90None
Male accessory glands1 00 of 4 2.00None
Virgin spermatheca0 00 of 4 0.63None
Mated spermatheca0 00 of 4 0.97None
Adult carcass2 10 of 4 3.80None
Larval CNS0 00 of 4 0.47None
Larval Salivary gland1 00 of 4 2.13None
Larval midgut0 00 of 4 1.13None
Larval tubule0 00 of 4 1.00None
Larval hindgut0 00 of 4 0.63None
Larval fat body2 00 of 4 3.10Up
Larval trachea0 00 of 4 0.73None
Larval carcass1 00 of 4 1.67None
S2 cells (growing)0 00 of 4 0.53None
Whole fly0 00 of 4



():

Annotation Number : CG31649
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5187675-5205389 (+) // 100.0 //
Probeset : 1632945_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain328 244 of 4 2.60Up
Head169 224 of 4 1.30None
Eye439 384 of 4 3.43Up
Thoracicoabdominal ganglion435 574 of 4 3.40Up
Salivary gland73 204 of 4 0.57None
Crop910 354 of 4 7.10Up
Midgut132 84 of 4 1.00None
Tubule74 64 of 4 0.60Down
Hindgut679 514 of 4 5.30Up
Heart599 394 of 4 4.68Up
Fat body150 204 of 4 1.17None
Ovary17 20 of 4 0.10Down
Testis476 294 of 4 3.70Up
Male accessory glands189 94 of 4 1.50Up
Virgin spermatheca60 64 of 4 0.47Down
Mated spermatheca89 104 of 4 0.70Down
Adult carcass303 584 of 4 2.40None
Larval CNS213 454 of 4 1.66Up
Larval Salivary gland259 114 of 4 2.02Up
Larval midgut172 154 of 4 1.35None
Larval tubule312 144 of 4 2.40Up
Larval hindgut1250 2374 of 4 9.77Up
Larval fat body196 114 of 4 1.50Up
Larval trachea2222 1804 of 417.37Up
Larval carcass395 204 of 4 3.09Up
S2 cells (growing)496 144 of 4 3.88Up
Whole fly128 44 of 4



():

Annotation Number : HDC00874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5152119-5152283 (+) // 96.47 //
Probeset : 1627250_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 24 of 4 8.90Up
Head6 10 of 4 1.40None
Eye12 22 of 4 2.85Up
Thoracicoabdominal ganglion47 24 of 411.00Up
Salivary gland9 50 of 4 2.09None
Crop112 14 of 426.40Up
Midgut19 10 of 4 4.60Up
Tubule25 23 of 4 6.00Up
Hindgut81 34 of 418.90Up
Heart41 44 of 4 9.70Up
Fat body3 10 of 4 0.70None
Ovary2 00 of 4 0.60None
Testis6 00 of 4 1.50None
Male accessory glands13 30 of 4 3.10None
Virgin spermatheca2 10 of 4 0.64None
Mated spermatheca4 10 of 4 1.07None
Adult carcass10 20 of 4 2.50None
Larval CNS17 24 of 4 4.12Up
Larval Salivary gland14 10 of 4 3.40Up
Larval midgut12 30 of 4 2.88None
Larval tubule12 12 of 4 2.80Up
Larval hindgut40 84 of 4 9.40Up
Larval fat body2 00 of 4 0.50None
Larval trachea113 74 of 426.63Up
Larval carcass20 32 of 4 4.78Up
S2 cells (growing)2 00 of 4 0.50None
Whole fly4 00 of 4



():

Annotation Number : CG31916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5158457-5186211 (+) // 99.98 //
Probeset : 1641672_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 14 of 4 1.10None
Head16 21 of 4 0.90None
Eye5 31 of 4 0.32Down
Thoracicoabdominal ganglion19 41 of 4 1.10None
Salivary gland29 90 of 4 1.61None
Crop56 63 of 4 3.00Up
Midgut89 74 of 4 4.90Up
Tubule37 64 of 4 2.00Up
Hindgut68 34 of 4 3.70Up
Heart17 23 of 4 0.93None
Fat body29 51 of 4 1.58Up
Ovary2 00 of 4 0.10Down
Testis5 00 of 4 0.30Down
Male accessory glands50 103 of 4 2.70None
Virgin spermatheca10 11 of 4 0.57Down
Mated spermatheca13 01 of 4 0.73None
Adult carcass19 40 of 4 1.10None
Larval CNS13 31 of 4 0.70None
Larval Salivary gland96 74 of 4 5.22Up
Larval midgut154 94 of 4 8.35Up
Larval tubule26 40 of 4 1.40None
Larval hindgut99 54 of 4 5.41Up
Larval fat body7 20 of 4 0.40Down
Larval trachea33 84 of 4 1.82Up
Larval carcass66 51 of 4 3.58Up
S2 cells (growing)74 44 of 4 4.01Up
Whole fly18 14 of 4



():

Annotation Number : CG18251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5121290-5158264 (+) // 100.0 //
Probeset : 1625210_a_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 22 of 4 0.20Down
Head57 24 of 4 0.90None
Eye46 54 of 4 0.73None
Thoracicoabdominal ganglion22 13 of 4 0.40Down
Salivary gland7 10 of 4 0.12Down
Crop354 154 of 4 5.70Up
Midgut25 14 of 4 0.40Down
Tubule36 24 of 4 0.60Down
Hindgut122 54 of 4 2.00Up
Heart158 174 of 4 2.52Up
Fat body10 30 of 4 0.16Down
Ovary6 00 of 4 0.10Down
Testis15 13 of 4 0.20Down
Male accessory glands42 24 of 4 0.70Down
Virgin spermatheca13 22 of 4 0.22Down
Mated spermatheca27 44 of 4 0.44Down
Adult carcass203 194 of 4 3.20Up
Larval CNS12 22 of 4 0.20Down
Larval Salivary gland10 20 of 4 0.16Down
Larval midgut41 34 of 4 0.66Down
Larval tubule26 34 of 4 0.40Down
Larval hindgut308 204 of 4 4.92Up
Larval fat body4 10 of 4 0.10Down
Larval trachea18 93 of 4 0.29Down
Larval carcass500 804 of 4 7.99Up
S2 cells (growing)20 24 of 4 0.33Down
Whole fly62 54 of 4

Looking for FBgn0261836. 6 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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