FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261836 through 18771 annotations produced 6 hits

():

Annotation Number : HDC00874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5152119-5152283 (+) // 96.47 //
Probeset : 1627250_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	37 ± 2	4 of 4	8.90	Up
Head	6 ± 1	0 of 4	1.40	None
Eye	12 ± 2	2 of 4	2.85	Up
Thoracicoabdominal ganglion	47 ± 2	4 of 4	11.00	Up
Salivary gland	9 ± 5	0 of 4	2.09	None
Crop	112 ± 1	4 of 4	26.40	Up
Midgut	19 ± 1	0 of 4	4.60	Up
Tubule	25 ± 2	3 of 4	6.00	Up
Hindgut	81 ± 3	4 of 4	18.90	Up
Heart	41 ± 4	4 of 4	9.70	Up
Fat body	3 ± 1	0 of 4	0.70	None
Ovary	2 ± 0	0 of 4	0.60	None
Testis	6 ± 0	0 of 4	1.50	None
Male accessory glands	13 ± 3	0 of 4	3.10	None
Virgin spermatheca	2 ± 1	0 of 4	0.64	None
Mated spermatheca	4 ± 1	0 of 4	1.07	None
Adult carcass	10 ± 2	0 of 4	2.50	None
Larval CNS	17 ± 2	4 of 4	4.12	Up
Larval Salivary gland	14 ± 1	0 of 4	3.40	Up
Larval midgut	12 ± 3	0 of 4	2.88	None
Larval tubule	12 ± 1	2 of 4	2.80	Up
Larval hindgut	40 ± 8	4 of 4	9.40	Up
Larval fat body	2 ± 0	0 of 4	0.50	None
Larval trachea	113 ± 7	4 of 4	26.63	Up
Larval carcass	20 ± 3	2 of 4	4.78	Up
S2 cells (growing)	2 ± 0	0 of 4	0.50	None
Whole fly	4 ± 0	0 of 4

():

Annotation Number : HDC00871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5109145-5111039 (+) // 100.0 //
Probeset : 1641717_s_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	3.80	Up
Head	8 ± 2	0 of 4	1.60	None
Eye	8 ± 2	1 of 4	1.66	None
Thoracicoabdominal ganglion	20 ± 1	4 of 4	4.00	Up
Salivary gland	10 ± 4	0 of 4	2.14	None
Crop	35 ± 3	4 of 4	7.10	Up
Midgut	13 ± 3	0 of 4	2.80	None
Tubule	12 ± 1	0 of 4	2.60	Up
Hindgut	20 ± 2	2 of 4	4.20	Up
Heart	7 ± 0	0 of 4	1.48	None
Fat body	7 ± 5	0 of 4	1.48	None
Ovary	4 ± 1	0 of 4	1.00	None
Testis	1 ± 0	0 of 4	0.30	Down
Male accessory glands	3 ± 0	0 of 4	0.70	None
Virgin spermatheca	8 ± 2	0 of 4	1.65	None
Mated spermatheca	8 ± 2	0 of 4	1.69	None
Adult carcass	17 ± 4	0 of 4	3.50	None
Larval CNS	9 ± 1	3 of 4	1.86	Up
Larval Salivary gland	12 ± 2	0 of 4	2.41	Up
Larval midgut	11 ± 2	1 of 4	2.30	Up
Larval tubule	12 ± 1	0 of 4	2.50	Up
Larval hindgut	19 ± 3	2 of 4	3.97	Up
Larval fat body	15 ± 2	0 of 4	3.10	Up
Larval trachea	17 ± 4	2 of 4	3.59	Up
Larval carcass	8 ± 2	0 of 4	1.78	None
S2 cells (growing)	3 ± 2	0 of 4	0.72	None
Whole fly	5 ± 1	0 of 4

():

Annotation Number : CG14035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031685
Gbrowse : chr2L:5102797-5104074 (+) // 100.0 //
Probeset : 1638426_at
Accessions : protein= NP_608910;, nucleotide= NM_135066;
FlyMine data for FBgn0031685.
VDRC has 7 RNAi stocks for FBgn0031685 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.70	None
Head	1 ± 0	0 of 4	1.80	None
Eye	1 ± 0	0 of 4	2.03	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	2.50	None
Salivary gland	7 ± 6	0 of 4	10.17	None
Crop	2 ± 1	0 of 4	2.70	None
Midgut	0 ± 0	0 of 4	1.10	None
Tubule	1 ± 0	0 of 4	1.40	Up
Hindgut	1 ± 0	0 of 4	2.10	None
Heart	1 ± 0	0 of 4	2.60	None
Fat body	1 ± 1	0 of 4	2.43	None
Ovary	0 ± 0	0 of 4	0.90	None
Testis	0 ± 0	0 of 4	0.90	None
Male accessory glands	1 ± 0	0 of 4	2.00	None
Virgin spermatheca	0 ± 0	0 of 4	0.63	None
Mated spermatheca	0 ± 0	0 of 4	0.97	None
Adult carcass	2 ± 1	0 of 4	3.80	None
Larval CNS	0 ± 0	0 of 4	0.47	None
Larval Salivary gland	1 ± 0	0 of 4	2.13	None
Larval midgut	0 ± 0	0 of 4	1.13	None
Larval tubule	0 ± 0	0 of 4	1.00	None
Larval hindgut	0 ± 0	0 of 4	0.63	None
Larval fat body	2 ± 0	0 of 4	3.10	Up
Larval trachea	0 ± 0	0 of 4	0.73	None
Larval carcass	1 ± 0	0 of 4	1.67	None
S2 cells (growing)	0 ± 0	0 of 4	0.53	None
Whole fly	0 ± 0	0 of 4

():

Annotation Number : CG31916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5158457-5186211 (+) // 99.98 //
Probeset : 1641672_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	20 ± 1	4 of 4	1.10	None
Head	16 ± 2	1 of 4	0.90	None
Eye	5 ± 3	1 of 4	0.32	Down
Thoracicoabdominal ganglion	19 ± 4	1 of 4	1.10	None
Salivary gland	29 ± 9	0 of 4	1.61	None
Crop	56 ± 6	3 of 4	3.00	Up
Midgut	89 ± 7	4 of 4	4.90	Up
Tubule	37 ± 6	4 of 4	2.00	Up
Hindgut	68 ± 3	4 of 4	3.70	Up
Heart	17 ± 2	3 of 4	0.93	None
Fat body	29 ± 5	1 of 4	1.58	Up
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	5 ± 0	0 of 4	0.30	Down
Male accessory glands	50 ± 10	3 of 4	2.70	None
Virgin spermatheca	10 ± 1	1 of 4	0.57	Down
Mated spermatheca	13 ± 0	1 of 4	0.73	None
Adult carcass	19 ± 4	0 of 4	1.10	None
Larval CNS	13 ± 3	1 of 4	0.70	None
Larval Salivary gland	96 ± 7	4 of 4	5.22	Up
Larval midgut	154 ± 9	4 of 4	8.35	Up
Larval tubule	26 ± 4	0 of 4	1.40	None
Larval hindgut	99 ± 5	4 of 4	5.41	Up
Larval fat body	7 ± 2	0 of 4	0.40	Down
Larval trachea	33 ± 8	4 of 4	1.82	Up
Larval carcass	66 ± 5	1 of 4	3.58	Up
S2 cells (growing)	74 ± 4	4 of 4	4.01	Up
Whole fly	18 ± 1	4 of 4

():

Annotation Number : CG18251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5121290-5158264 (+) // 100.0 //
Probeset : 1625210_a_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 2	2 of 4	0.20	Down
Head	57 ± 2	4 of 4	0.90	None
Eye	46 ± 5	4 of 4	0.73	None
Thoracicoabdominal ganglion	22 ± 1	3 of 4	0.40	Down
Salivary gland	7 ± 1	0 of 4	0.12	Down
Crop	354 ± 15	4 of 4	5.70	Up
Midgut	25 ± 1	4 of 4	0.40	Down
Tubule	36 ± 2	4 of 4	0.60	Down
Hindgut	122 ± 5	4 of 4	2.00	Up
Heart	158 ± 17	4 of 4	2.52	Up
Fat body	10 ± 3	0 of 4	0.16	Down
Ovary	6 ± 0	0 of 4	0.10	Down
Testis	15 ± 1	3 of 4	0.20	Down
Male accessory glands	42 ± 2	4 of 4	0.70	Down
Virgin spermatheca	13 ± 2	2 of 4	0.22	Down
Mated spermatheca	27 ± 4	4 of 4	0.44	Down
Adult carcass	203 ± 19	4 of 4	3.20	Up
Larval CNS	12 ± 2	2 of 4	0.20	Down
Larval Salivary gland	10 ± 2	0 of 4	0.16	Down
Larval midgut	41 ± 3	4 of 4	0.66	Down
Larval tubule	26 ± 3	4 of 4	0.40	Down
Larval hindgut	308 ± 20	4 of 4	4.92	Up
Larval fat body	4 ± 1	0 of 4	0.10	Down
Larval trachea	18 ± 9	3 of 4	0.29	Down
Larval carcass	500 ± 80	4 of 4	7.99	Up
S2 cells (growing)	20 ± 2	4 of 4	0.33	Down
Whole fly	62 ± 5	4 of 4

():

Annotation Number : CG31649
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260952
Gbrowse : chr2L:5187675-5205389 (+) // 100.0 //
Probeset : 1632945_at
Accessions : protein= NP_001027222; /// NP_001027223; /// NP_001027224; /// NP_001162885; /// NP_001162886;, nucleotide= NM_001032051; /// NM_001032052; /// NM_001032053; /// NM_001169414; /// NM_001169415;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred
FlyMine data for FBgn0260952.
VDRC has 7 RNAi stocks for FBgn0260952 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	328 ± 24	4 of 4	2.60	Up
Head	169 ± 22	4 of 4	1.30	None
Eye	439 ± 38	4 of 4	3.43	Up
Thoracicoabdominal ganglion	435 ± 57	4 of 4	3.40	Up
Salivary gland	73 ± 20	4 of 4	0.57	None
Crop	910 ± 35	4 of 4	7.10	Up
Midgut	132 ± 8	4 of 4	1.00	None
Tubule	74 ± 6	4 of 4	0.60	Down
Hindgut	679 ± 51	4 of 4	5.30	Up
Heart	599 ± 39	4 of 4	4.68	Up
Fat body	150 ± 20	4 of 4	1.17	None
Ovary	17 ± 2	0 of 4	0.10	Down
Testis	476 ± 29	4 of 4	3.70	Up
Male accessory glands	189 ± 9	4 of 4	1.50	Up
Virgin spermatheca	60 ± 6	4 of 4	0.47	Down
Mated spermatheca	89 ± 10	4 of 4	0.70	Down
Adult carcass	303 ± 58	4 of 4	2.40	None
Larval CNS	213 ± 45	4 of 4	1.66	Up
Larval Salivary gland	259 ± 11	4 of 4	2.02	Up
Larval midgut	172 ± 15	4 of 4	1.35	None
Larval tubule	312 ± 14	4 of 4	2.40	Up
Larval hindgut	1250 ± 237	4 of 4	9.77	Up
Larval fat body	196 ± 11	4 of 4	1.50	Up
Larval trachea	2222 ± 180	4 of 4	17.37	Up
Larval carcass	395 ± 20	4 of 4	3.09	Up
S2 cells (growing)	496 ± 14	4 of 4	3.88	Up
Whole fly	128 ± 4	4 of 4

Looking for FBgn0261836. 6 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720