FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261839 through 18771 annotations produced 3 hits

mod(mdg4) (chr3-70.7):

Annotation Number : CG32491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 49228
Gbrowse : Modifier67.2
Probeset : 1636471_at
Accessions : protein= NM_001104386; /// NM_001104387; /// NM_001104388; /// NM_080197; /// NM_163877; /// NM_163878; /// NM_163879; /// NM_163880; /// NM_163881; /// NM_163882; /// NM_163883; /// NM_163884; /// NM_163885; /// NM_163886; /// NM_163887; /// NM_163888; /// NM_163889; /// NM_163890; /// NM_163891; /// NM_163892; /// NM_163893; /// NM_163894; /// NM_176521; /// NM_176522; /// NM_176523; /// NM_176524; /// NM_176525; /// NM_176526; /// NM_176527;, nucleotide= FBgn0002781
Pathway : 0003682 // chromatin binding // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor act
FlyMine data for 49228.
BioGrid reports that CG32491 interacts with CG9891 CG3937 CG4692 CG4818 CG6415 CG7202 CG7291 CG7524 CG8361 CG8569 CG8854 CG9401 CG9572 CG5942 CG6500 CG1689 CG3938 CG8887 CG11387 CG11387 CG11387 CG11387 CG3827 CG3827 CG3827 CG3827 CG3827 CG3827 CG8573 CG8573 CG8651 CG8651 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG33261 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	89 ± 2	4 of 4	2.60	Up
Head	26 ± 0	4 of 4	0.80	None
Eye	54 ± 5	4 of 4	1.62	Up
Thoracicoabdominal ganglion	74 ± 4	4 of 4	2.20	Up
Salivary gland	34 ± 3	1 of 4	1.01	None
Crop	28 ± 2	4 of 4	0.80	None
Midgut	22 ± 4	1 of 4	0.70	None
Tubule	11 ± 1	0 of 4	0.30	Down
Hindgut	22 ± 2	1 of 4	0.70	Down
Heart	15 ± 1	3 of 4	0.47	Down
Fat body	12 ± 3	0 of 4	0.37	Down
Ovary	86 ± 4	4 of 4	2.60	Up
Testis	23 ± 0	4 of 4	0.70	None
Male accessory glands	30 ± 5	1 of 4	0.90	None
Virgin spermatheca	7 ± 1	0 of 4	0.23	Down
Mated spermatheca	9 ± 3	1 of 4	0.27	Down
Adult carcass	19 ± 3	1 of 4	0.60	Down
Larval CNS	125 ± 6	4 of 4	3.73	Up
Larval Salivary gland	54 ± 6	3 of 4	1.60	None
Larval midgut	15 ± 1	0 of 4	0.44	Down
Larval tubule	40 ± 3	4 of 4	1.20	None
Larval hindgut	21 ± 1	1 of 4	0.63	Down
Larval fat body	42 ± 4	4 of 4	1.30	None
Larval trachea	27 ± 2	4 of 4	0.81	None
Larval carcass	22 ± 2	4 of 4	0.67	Down
S2 cells (growing)	41 ± 1	4 of 4	1.23	None
Whole fly	33 ± 3	4 of 4

mod(mdg4) (chr3-70.7):

Annotation Number : CG32491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 49228
Gbrowse : Modifier67.2
Probeset : 1637723_at
Accessions : protein= NM_001104386; /// NM_001104387; /// NM_001104388; /// NM_080197; /// NM_163877; /// NM_163878; /// NM_163879; /// NM_163880; /// NM_163881; /// NM_163882; /// NM_163883; /// NM_163884; /// NM_163885; /// NM_163886; /// NM_163887; /// NM_163888; /// NM_163889; /// NM_163890; /// NM_163891; /// NM_163892; /// NM_163893; /// NM_163894; /// NM_176521; /// NM_176522; /// NM_176523; /// NM_176524; /// NM_176525; /// NM_176526; /// NM_176527;, nucleotide= FBgn0002781
Pathway : 0003682 // chromatin binding // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor act
FlyMine data for 49228.
BioGrid reports that CG32491 interacts with CG9891 CG3937 CG4692 CG4818 CG6415 CG7202 CG7291 CG7524 CG8361 CG8569 CG8854 CG9401 CG9572 CG5942 CG6500 CG1689 CG3938 CG8887 CG11387 CG11387 CG11387 CG11387 CG3827 CG3827 CG3827 CG3827 CG3827 CG3827 CG8573 CG8573 CG8651 CG8651 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG33261 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	302 ± 7	4 of 4	1.90	Up
Head	91 ± 4	4 of 4	0.60	Down
Eye	164 ± 8	4 of 4	1.02	None
Thoracicoabdominal ganglion	359 ± 23	4 of 4	2.20	Up
Salivary gland	171 ± 17	4 of 4	1.07	None
Crop	104 ± 2	4 of 4	0.60	Down
Midgut	79 ± 3	4 of 4	0.50	Down
Tubule	85 ± 1	4 of 4	0.50	Down
Hindgut	72 ± 2	4 of 4	0.40	Down
Heart	109 ± 0	4 of 4	0.68	Down
Fat body	88 ± 5	4 of 4	0.55	Down
Ovary	367 ± 7	4 of 4	2.30	Up
Testis	23 ± 2	4 of 4	0.10	Down
Male accessory glands	128 ± 10	4 of 4	0.80	Down
Virgin spermatheca	124 ± 2	4 of 4	0.77	Down
Mated spermatheca	119 ± 6	4 of 4	0.74	Down
Adult carcass	71 ± 7	4 of 4	0.40	Down
Larval CNS	405 ± 32	4 of 4	2.52	Up
Larval Salivary gland	204 ± 8	4 of 4	1.27	Up
Larval midgut	76 ± 8	4 of 4	0.47	Down
Larval tubule	143 ± 7	4 of 4	0.90	None
Larval hindgut	107 ± 4	4 of 4	0.67	Down
Larval fat body	89 ± 4	4 of 4	0.60	Down
Larval trachea	160 ± 18	4 of 4	1.00	None
Larval carcass	106 ± 3	4 of 4	0.66	Down
S2 cells (growing)	149 ± 5	4 of 4	0.93	None
Whole fly	161 ± 8	4 of 4

mod(mdg4) (chr3-70.7):

Annotation Number : CG32491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 49228
Gbrowse : Modifier67.2
Probeset : 1627603_at
Accessions : protein= NM_001104386; /// NM_001104387; /// NM_001104388; /// NM_080197; /// NM_163877; /// NM_163878; /// NM_163879; /// NM_163880; /// NM_163881; /// NM_163882; /// NM_163883; /// NM_163884; /// NM_163885; /// NM_163886; /// NM_163887; /// NM_163888; /// NM_163889; /// NM_163890; /// NM_163891; /// NM_163892; /// NM_163893; /// NM_163894; /// NM_176521; /// NM_176522; /// NM_176523; /// NM_176524; /// NM_176525; /// NM_176526; /// NM_176527;, nucleotide= FBgn0002781
Pathway : 0003682 // chromatin binding // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor act
FlyMine data for 49228.
BioGrid reports that CG32491 interacts with CG9891 CG3937 CG4692 CG4818 CG6415 CG7202 CG7291 CG7524 CG8361 CG8569 CG8854 CG9401 CG9572 CG5942 CG6500 CG1689 CG3938 CG8887 CG11387 CG11387 CG11387 CG11387 CG3827 CG3827 CG3827 CG3827 CG3827 CG3827 CG8573 CG8573 CG8651 CG8651 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG33261 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	52 ± 0	4 of 4	4.70	Up
Head	20 ± 0	0 of 4	1.80	Up
Eye	32 ± 1	4 of 4	2.91	Up
Thoracicoabdominal ganglion	38 ± 1	4 of 4	3.50	Up
Salivary gland	21 ± 6	1 of 4	1.88	None
Crop	20 ± 1	0 of 4	1.90	Up
Midgut	8 ± 2	0 of 4	0.80	None
Tubule	6 ± 1	0 of 4	0.50	Down
Hindgut	17 ± 2	0 of 4	1.50	None
Heart	13 ± 2	0 of 4	1.23	None
Fat body	14 ± 2	0 of 4	1.30	None
Ovary	17 ± 1	1 of 4	1.50	Up
Testis	6 ± 0	0 of 4	0.60	Down
Male accessory glands	20 ± 6	0 of 4	1.80	None
Virgin spermatheca	4 ± 1	0 of 4	0.40	Down
Mated spermatheca	5 ± 2	0 of 4	0.46	Down
Adult carcass	16 ± 5	0 of 4	1.50	None
Larval CNS	60 ± 5	4 of 4	5.45	Up
Larval Salivary gland	26 ± 2	0 of 4	2.39	Up
Larval midgut	10 ± 2	0 of 4	0.92	None
Larval tubule	26 ± 1	1 of 4	2.30	Up
Larval hindgut	17 ± 1	0 of 4	1.55	Up
Larval fat body	29 ± 3	0 of 4	2.60	Up
Larval trachea	18 ± 2	4 of 4	1.65	Up
Larval carcass	11 ± 3	0 of 4	1.02	None
S2 cells (growing)	22 ± 0	1 of 4	2.06	Up
Whole fly	11 ± 0	0 of 4

Looking for FBgn0261839. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720