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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261854 through 18771 annotations produced 2 hits



():

Annotation Number : CG10261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022131
Gbrowse : chr2R:10831959-10850451 (-) // 100.0 //
Probeset : 1627948_at
Accessions : protein= NP_001036541; /// NP_001036542; /// NP_001036543; /// NP_001036544; /// NP_001036545; /// NP_524892;, nucleotide= NM_001043076; /// NM_001043077; /// NM_001043078; /// NM_001043079; /// NM_001043080; /// NM_080153;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0022131.
Homophila reports that CG10261 is a close match (7e-11) to human gene SRK;STD;ZAP70 (NP_997402), a gene associated with Selective T-cell defect (3).
BioGrid reports that CG10261 interacts with CG5884 CG10263 CG11526 CG11796 CG12470 CG14815 CG4303 CG4394 CG6856 CG8417 CG8548 CG9653 CG5692 .
VDRC has 2 RNAi stocks for FBgn0022131 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain482 334 of 4 9.90Up
Head154 174 of 4 3.20Up
Eye34 24 of 4 0.71None
Thoracicoabdominal ganglion416 174 of 4 8.60Up
Salivary gland49 44 of 4 1.01None
Crop100 84 of 4 2.10Up
Midgut172 94 of 4 3.50Up
Tubule96 84 of 4 2.00Up
Hindgut97 24 of 4 2.00Up
Heart36 34 of 4 0.74None
Fat body25 34 of 4 0.53None
Ovary18 04 of 4 0.40Down
Testis10 14 of 4 0.20Down
Male accessory glands28 44 of 4 0.60None
Virgin spermatheca52 84 of 4 1.08None
Mated spermatheca65 64 of 4 1.35None
Adult carcass35 54 of 4 0.70None
Larval CNS355 454 of 4 7.31Up
Larval Salivary gland70 94 of 4 1.45None
Larval midgut144 74 of 4 2.98Up
Larval tubule145 114 of 4 3.00Up
Larval hindgut147 54 of 4 3.03Up
Larval fat body34 34 of 4 0.70None
Larval trachea56 94 of 4 1.15None
Larval carcass120 84 of 4 2.48Up
S2 cells (growing)191 94 of 4 3.93Up
Whole fly48 84 of 4



():

Annotation Number : CG30475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260478
Gbrowse : chr2R:10838902-10841020 (-) // 100.0 //
Probeset : 1640307_at
Accessions : protein= NP_725431;, nucleotide= NM_166075;
FlyMine data for FBgn0260478.
VDRC has 2 RNAi stocks for FBgn0260478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 7.90Up
Head5 11 of 4 2.70None
Eye10 23 of 4 5.22Up
Thoracicoabdominal ganglion10 12 of 4 5.00Up
Salivary gland10 20 of 4 5.03None
Crop1 10 of 4 0.90None
Midgut5 20 of 4 2.80None
Tubule3 00 of 4 1.90Up
Hindgut1 00 of 4 0.80None
Heart2 00 of 4 1.26None
Fat body3 20 of 4 1.93None
Ovary2 00 of 4 1.20None
Testis3 11 of 4 1.90None
Male accessory glands5 40 of 4 2.90None
Virgin spermatheca2 10 of 4 1.43None
Mated spermatheca4 21 of 4 2.43None
Adult carcass5 10 of 4 2.70Up
Larval CNS1 10 of 4 0.99None
Larval Salivary gland7 11 of 4 3.61Up
Larval midgut3 10 of 4 1.85None
Larval tubule4 10 of 4 2.30None
Larval hindgut2 00 of 4 1.18None
Larval fat body3 10 of 4 1.70None
Larval trachea3 20 of 4 1.70None
Larval carcass3 10 of 4 1.55None
S2 cells (growing)1 00 of 4 0.64None
Whole fly2 00 of 4

Looking for FBgn0261854. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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