Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261862 through 18771 annotations produced 1 hits



():

Annotation Number : CG12891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027842
Gbrowse : chr2R:6356977-6366073 (-) // 100.0 //
Probeset : 1626147_s_at
Accessions : protein= NP_001163111; /// NP_001163112; /// NP_523685; /// NP_724940;, nucleotide= NM_001169640; /// NM_001169641; /// NM_078961; /// NM_165777;
Interpro : 0004095 // carnitine O-palmitoyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransfera
FlyMine data for FBgn0027842.
Homophila reports that CG12891 is a close match (6e-64) to human gene CHAT;CMS1A2 (NP_065574), a gene associated with Myasthenic syndrome, congenital, associated with episodic apnea, 254210 (3).
BioGrid reports that CG12891 interacts with CG13032 CG13394 CG17776 CG2865 CG5408 .
VDRC has 3 RNAi stocks for FBgn0027842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain337 74 of 4 0.60Down
Head927 724 of 4 1.80Up
Eye620 414 of 4 1.18None
Thoracicoabdominal ganglion334 114 of 4 0.60Down
Salivary gland1145 894 of 4 2.19Up
Crop948 134 of 4 1.80Up
Midgut1815 284 of 4 3.50Up
Tubule1015 1654 of 4 1.90Up
Hindgut575 94 of 4 1.10None
Heart848 114 of 4 1.62Up
Fat body1527 1214 of 4 2.92Up
Ovary468 104 of 4 0.90None
Testis100 24 of 4 0.20Down
Male accessory glands494 274 of 4 0.90None
Virgin spermatheca1319 644 of 4 2.52Up
Mated spermatheca1051 614 of 4 2.01Up
Adult carcass949 314 of 4 1.80Up
Larval CNS121 94 of 4 0.23Down
Larval Salivary gland453 144 of 4 0.86None
Larval midgut601 1494 of 4 1.15None
Larval tubule2173 364 of 4 4.10Up
Larval hindgut330 414 of 4 0.63Down
Larval fat body1260 1154 of 4 2.40Up
Larval trachea417 644 of 4 0.80None
Larval carcass381 514 of 4 0.73None
S2 cells (growing)342 84 of 4 0.65Down
Whole fly523 424 of 4

Looking for FBgn0261862. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime