FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261862 through 18771 annotations produced 1 hits

():

Annotation Number : CG12891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027842
Gbrowse : chr2R:6356977-6366073 (-) // 100.0 //
Probeset : 1626147_s_at
Accessions : protein= NP_001163111; /// NP_001163112; /// NP_523685; /// NP_724940;, nucleotide= NM_001169640; /// NM_001169641; /// NM_078961; /// NM_165777;
Interpro : 0004095 // carnitine O-palmitoyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransfera
FlyMine data for FBgn0027842.
Homophila reports that CG12891 is a close match (6e-64) to human gene CHAT;CMS1A2 (NP_065574), a gene associated with Myasthenic syndrome, congenital, associated with episodic apnea, 254210 (3).
BioGrid reports that CG12891 interacts with CG13032 CG13394 CG17776 CG2865 CG5408 .
VDRC has 3 RNAi stocks for FBgn0027842 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	337 ± 7	4 of 4	0.60	Down
Head	927 ± 72	4 of 4	1.80	Up
Eye	620 ± 41	4 of 4	1.18	None
Thoracicoabdominal ganglion	334 ± 11	4 of 4	0.60	Down
Salivary gland	1145 ± 89	4 of 4	2.19	Up
Crop	948 ± 13	4 of 4	1.80	Up
Midgut	1815 ± 28	4 of 4	3.50	Up
Tubule	1015 ± 165	4 of 4	1.90	Up
Hindgut	575 ± 9	4 of 4	1.10	None
Heart	848 ± 11	4 of 4	1.62	Up
Fat body	1527 ± 121	4 of 4	2.92	Up
Ovary	468 ± 10	4 of 4	0.90	None
Testis	100 ± 2	4 of 4	0.20	Down
Male accessory glands	494 ± 27	4 of 4	0.90	None
Virgin spermatheca	1319 ± 64	4 of 4	2.52	Up
Mated spermatheca	1051 ± 61	4 of 4	2.01	Up
Adult carcass	949 ± 31	4 of 4	1.80	Up
Larval CNS	121 ± 9	4 of 4	0.23	Down
Larval Salivary gland	453 ± 14	4 of 4	0.86	None
Larval midgut	601 ± 149	4 of 4	1.15	None
Larval tubule	2173 ± 36	4 of 4	4.10	Up
Larval hindgut	330 ± 41	4 of 4	0.63	Down
Larval fat body	1260 ± 115	4 of 4	2.40	Up
Larval trachea	417 ± 64	4 of 4	0.80	None
Larval carcass	381 ± 51	4 of 4	0.73	None
S2 cells (growing)	342 ± 8	4 of 4	0.65	Down
Whole fly	523 ± 42	4 of 4

Looking for FBgn0261862. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720