FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261872 through 18771 annotations produced 4 hits

():

Annotation Number : CG32168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053522
Gbrowse : chr3L:17029954-17031867 (-) // 100.0 //
Probeset : 1627184_at
Accessions : protein= NP_001014589; /// NP_001034028; /// NP_001163457;, nucleotide= NM_001014589; /// NM_001038939; /// NM_001169986;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0053522.
BDGP gene expression has embryonic in situ data for scaf6: 9 pix of staining in 7 body parts.
VDRC has 5 RNAi stocks for FBgn0053522 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	237 ± 10	4 of 4	5.20	Up
Head	39 ± 4	4 of 4	0.90	None
Eye	50 ± 2	4 of 4	1.09	None
Thoracicoabdominal ganglion	154 ± 9	4 of 4	3.40	Up
Salivary gland	88 ± 9	4 of 4	1.94	Up
Crop	74 ± 3	4 of 4	1.60	Up
Midgut	38 ± 3	4 of 4	0.80	None
Tubule	46 ± 2	4 of 4	1.00	None
Hindgut	51 ± 3	4 of 4	1.10	None
Heart	46 ± 1	4 of 4	1.02	None
Fat body	41 ± 8	4 of 4	0.90	None
Ovary	88 ± 2	4 of 4	1.90	Up
Testis	29 ± 0	4 of 4	0.60	Down
Male accessory glands	44 ± 2	4 of 4	1.00	None
Virgin spermatheca	43 ± 2	4 of 4	0.95	None
Mated spermatheca	38 ± 1	4 of 4	0.84	None
Adult carcass	45 ± 2	4 of 4	1.00	None
Larval CNS	184 ± 3	4 of 4	4.03	Up
Larval Salivary gland	116 ± 17	4 of 4	2.54	Up
Larval midgut	41 ± 4	4 of 4	0.90	None
Larval tubule	61 ± 2	4 of 4	1.30	Up
Larval hindgut	57 ± 4	4 of 4	1.25	None
Larval fat body	52 ± 1	4 of 4	1.20	None
Larval trachea	91 ± 11	4 of 4	2.00	Up
Larval carcass	61 ± 4	4 of 4	1.35	Up
S2 cells (growing)	107 ± 2	4 of 4	2.35	Up
Whole fly	45 ± 3	4 of 4

():

Annotation Number : Stencil:3L:16988212:16987710:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053522
Gbrowse : chr3L:17031930-17032432 (-) // 100.0 //
Probeset : 1632723_at
Accessions : protein= NP_001014589; /// NP_001034028; /// NP_001163457;, nucleotide= NM_001014589; /// NM_001038939; /// NM_001169986;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0053522.
BDGP gene expression has embryonic in situ data for scaf6: 9 pix of staining in 7 body parts.
VDRC has 5 RNAi stocks for FBgn0053522 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 3	4 of 4	1.80	Up
Head	11 ± 1	1 of 4	0.90	None
Eye	6 ± 2	1 of 4	0.53	None
Thoracicoabdominal ganglion	15 ± 2	2 of 4	1.20	None
Salivary gland	14 ± 4	0 of 4	1.16	None
Crop	15 ± 1	2 of 4	1.20	None
Midgut	12 ± 1	1 of 4	1.00	None
Tubule	6 ± 0	0 of 4	0.50	Down
Hindgut	11 ± 1	0 of 4	0.90	None
Heart	3 ± 1	0 of 4	0.30	None
Fat body	12 ± 3	0 of 4	0.97	None
Ovary	18 ± 1	4 of 4	1.40	None
Testis	8 ± 0	1 of 4	0.70	None
Male accessory glands	15 ± 1	1 of 4	1.20	None
Virgin spermatheca	5 ± 1	1 of 4	0.42	None
Mated spermatheca	6 ± 1	1 of 4	0.55	None
Adult carcass	11 ± 2	0 of 4	0.90	None
Larval CNS	12 ± 0	4 of 4	1.04	None
Larval Salivary gland	6 ± 1	0 of 4	0.48	None
Larval midgut	9 ± 0	0 of 4	0.79	None
Larval tubule	9 ± 1	2 of 4	0.80	None
Larval hindgut	6 ± 1	0 of 4	0.48	None
Larval fat body	18 ± 4	3 of 4	1.40	None
Larval trachea	7 ± 3	1 of 4	0.60	None
Larval carcass	6 ± 2	0 of 4	0.54	None
S2 cells (growing)	36 ± 2	4 of 4	2.93	Up
Whole fly	12 ± 3	4 of 4

():

Annotation Number : CG6615
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053522
Gbrowse : chr3L:17034033-17035659 (-) // 100.0 //
Probeset : 1629438_at
Accessions : protein= NP_001014589; /// NP_001034028; /// NP_001163457;, nucleotide= NM_001014589; /// NM_001038939; /// NM_001169986;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0053522.
BDGP gene expression has embryonic in situ data for scaf6: 9 pix of staining in 7 body parts.
VDRC has 5 RNAi stocks for FBgn0053522 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	139 ± 8	4 of 4	5.30	Up
Head	21 ± 0	4 of 4	0.80	None
Eye	61 ± 2	4 of 4	2.32	Up
Thoracicoabdominal ganglion	123 ± 13	4 of 4	4.70	Up
Salivary gland	61 ± 7	4 of 4	2.31	Up
Crop	76 ± 3	4 of 4	2.90	Up
Midgut	44 ± 3	4 of 4	1.70	Up
Tubule	34 ± 1	4 of 4	1.30	Up
Hindgut	46 ± 2	4 of 4	1.80	Up
Heart	46 ± 3	4 of 4	1.77	Up
Fat body	74 ± 12	4 of 4	2.80	Up
Ovary	45 ± 3	4 of 4	1.70	Up
Testis	12 ± 1	4 of 4	0.50	Down
Male accessory glands	54 ± 1	4 of 4	2.10	Up
Virgin spermatheca	72 ± 4	4 of 4	2.74	Up
Mated spermatheca	100 ± 5	4 of 4	3.82	Up
Adult carcass	40 ± 5	4 of 4	1.50	None
Larval CNS	141 ± 18	4 of 4	5.38	Up
Larval Salivary gland	113 ± 8	4 of 4	4.28	Up
Larval midgut	33 ± 1	4 of 4	1.26	None
Larval tubule	57 ± 3	4 of 4	2.20	Up
Larval hindgut	42 ± 3	4 of 4	1.59	Up
Larval fat body	63 ± 3	4 of 4	2.40	Up
Larval trachea	114 ± 10	4 of 4	4.32	Up
Larval carcass	55 ± 4	4 of 4	2.09	Up
S2 cells (growing)	53 ± 2	4 of 4	2.01	Up
Whole fly	26 ± 3	4 of 4

():

Annotation Number : Stencil:3L:16989600:16988801:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053522
Gbrowse : chr3L:17033021-17033820 (-) // 100.0 //
Probeset : 1631356_at
Accessions : protein= NP_001014589; /// NP_001034028; /// NP_001163457;, nucleotide= NM_001014589; /// NM_001038939; /// NM_001169986;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0053522.
BDGP gene expression has embryonic in situ data for scaf6: 9 pix of staining in 7 body parts.
VDRC has 5 RNAi stocks for FBgn0053522 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	108 ± 4	4 of 4	4.90	Up
Head	20 ± 1	4 of 4	0.90	None
Eye	38 ± 0	4 of 4	1.75	Up
Thoracicoabdominal ganglion	103 ± 5	4 of 4	4.70	Up
Salivary gland	33 ± 4	2 of 4	1.52	None
Crop	44 ± 2	4 of 4	2.00	Up
Midgut	30 ± 2	4 of 4	1.40	None
Tubule	19 ± 0	3 of 4	0.90	Down
Hindgut	28 ± 0	4 of 4	1.30	Up
Heart	31 ± 2	4 of 4	1.42	Up
Fat body	40 ± 2	4 of 4	1.85	Up
Ovary	22 ± 0	4 of 4	1.00	None
Testis	20 ± 0	4 of 4	0.90	None
Male accessory glands	39 ± 2	4 of 4	1.80	Up
Virgin spermatheca	27 ± 0	4 of 4	1.26	Up
Mated spermatheca	29 ± 3	4 of 4	1.33	None
Adult carcass	26 ± 3	4 of 4	1.20	None
Larval CNS	102 ± 8	4 of 4	4.65	Up
Larval Salivary gland	60 ± 3	4 of 4	2.76	Up
Larval midgut	22 ± 2	4 of 4	1.02	None
Larval tubule	30 ± 2	4 of 4	1.40	Up
Larval hindgut	22 ± 3	4 of 4	1.02	None
Larval fat body	44 ± 5	4 of 4	2.00	Up
Larval trachea	62 ± 5	4 of 4	2.82	Up
Larval carcass	35 ± 2	4 of 4	1.62	Up
S2 cells (growing)	50 ± 1	4 of 4	2.30	Up
Whole fly	22 ± 0	4 of 4

Looking for FBgn0261872. 4 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720