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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261873 through 18771 annotations produced 6 hits



():

Annotation Number : CT35341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8085175-8086090 (+) // 100.0 //
Probeset : 1635004_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 5.10Up
Head2 10 of 4 2.20None
Eye0 00 of 4 0.68None
Thoracicoabdominal ganglion1 00 of 4 1.10None
Salivary gland3 10 of 4 3.66None
Crop0 00 of 4 0.90None
Midgut1 00 of 4 1.30None
Tubule1 00 of 4 1.00None
Hindgut1 00 of 4 1.00None
Heart1 00 of 4 1.10None
Fat body0 00 of 4 0.66None
Ovary0 00 of 4 0.70None
Testis1 00 of 4 1.80None
Male accessory glands2 10 of 4 2.10None
Virgin spermatheca0 00 of 4 0.83None
Mated spermatheca1 10 of 4 1.76None
Adult carcass2 10 of 4 2.50None
Larval CNS4 00 of 4 4.10Up
Larval Salivary gland1 00 of 4 1.34None
Larval midgut3 00 of 4 2.98None
Larval tubule1 00 of 4 1.20None
Larval hindgut0 00 of 4 0.88None
Larval fat body3 10 of 4 3.60None
Larval trachea1 10 of 4 1.17None
Larval carcass0 00 of 4 0.54None
S2 cells (growing)0 00 of 4 0.39None
Whole fly1 00 of 4



():

Annotation Number : CT35343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8102587-8104717 (+) // 100.0 //
Probeset : 1633721_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 2.00None
Head3 10 of 4 1.70None
Eye2 00 of 4 1.17None
Thoracicoabdominal ganglion3 10 of 4 2.00None
Salivary gland4 10 of 4 2.39None
Crop2 10 of 4 1.60None
Midgut6 10 of 4 3.50None
Tubule3 00 of 4 2.00Up
Hindgut3 10 of 4 1.70None
Heart2 00 of 4 1.14None
Fat body3 30 of 4 1.89None
Ovary1 00 of 4 0.60None
Testis3 01 of 4 1.90None
Male accessory glands9 10 of 4 5.40Up
Virgin spermatheca4 00 of 4 2.79Up
Mated spermatheca3 10 of 4 1.86None
Adult carcass5 20 of 4 2.80None
Larval CNS2 10 of 4 1.43None
Larval Salivary gland5 10 of 4 3.24None
Larval midgut4 10 of 4 2.80None
Larval tubule4 00 of 4 2.30Up
Larval hindgut3 10 of 4 1.99None
Larval fat body5 20 of 4 3.00None
Larval trachea2 00 of 4 1.47None
Larval carcass2 10 of 4 1.21None
S2 cells (growing)4 00 of 4 2.46Up
Whole fly1 00 of 4



():

Annotation Number : CT35342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8098067-8098341 (+) // 100.0 //
Probeset : 1631732_s_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 20 of 4 3.50None
Head2 00 of 4 1.80None
Eye7 11 of 4 6.31None
Thoracicoabdominal ganglion3 00 of 4 3.40Up
Salivary gland13 50 of 412.22None
Crop1 00 of 4 1.50None
Midgut2 00 of 4 2.30Up
Tubule4 00 of 4 4.30Up
Hindgut1 00 of 4 1.20None
Heart2 00 of 4 2.38None
Fat body1 00 of 4 1.24None
Ovary0 00 of 4 0.80None
Testis3 00 of 4 3.20Up
Male accessory glands4 10 of 4 3.60None
Virgin spermatheca2 00 of 4 2.38None
Mated spermatheca1 00 of 4 1.33None
Adult carcass5 30 of 4 4.60None
Larval CNS3 10 of 4 2.82None
Larval Salivary gland4 10 of 4 3.98None
Larval midgut5 20 of 4 4.56None
Larval tubule1 00 of 4 1.70None
Larval hindgut1 00 of 4 1.47None
Larval fat body2 00 of 4 2.00None
Larval trachea3 40 of 4 3.29None
Larval carcass4 10 of 4 3.67None
S2 cells (growing)1 00 of 4 1.18None
Whole fly1 00 of 4



():

Annotation Number : CG32716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8072471-8072972 (+) // 100.0 //
Probeset : 1623665_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain106 54 of 412.80Up
Head22 21 of 4 2.70Up
Eye15 10 of 4 1.88Up
Thoracicoabdominal ganglion47 34 of 4 5.70Up
Salivary gland5 10 of 4 0.65None
Crop6 00 of 4 0.80None
Midgut4 20 of 4 0.60None
Tubule7 00 of 4 0.90None
Hindgut8 10 of 4 1.00None
Heart7 00 of 4 0.87None
Fat body13 20 of 4 1.67Up
Ovary4 00 of 4 0.50None
Testis4 00 of 4 0.50Down
Male accessory glands8 20 of 4 1.00None
Virgin spermatheca8 20 of 4 1.04None
Mated spermatheca10 22 of 4 1.21None
Adult carcass4 20 of 4 0.50None
Larval CNS35 54 of 4 4.19Up
Larval Salivary gland3 20 of 4 0.44None
Larval midgut7 30 of 4 0.92None
Larval tubule6 00 of 4 0.80None
Larval hindgut7 10 of 4 0.91None
Larval fat body7 20 of 4 0.90None
Larval trachea9 21 of 4 1.17None
Larval carcass8 10 of 4 1.05None
S2 cells (growing)5 00 of 4 0.61None
Whole fly8 10 of 4



():

Annotation Number : CG15342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8124645-8126951 (+) // 100.0 //
Probeset : 1639290_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.30None
Head8 31 of 4 2.00None
Eye15 31 of 4 3.75Up
Thoracicoabdominal ganglion3 10 of 4 0.80None
Salivary gland7 40 of 4 1.84None
Crop14 21 of 4 3.60Up
Midgut4 10 of 4 1.00None
Tubule3 00 of 4 0.90None
Hindgut6 10 of 4 1.70None
Heart4 10 of 4 1.21None
Fat body9 50 of 4 2.44None
Ovary6 30 of 4 1.50None
Testis2 00 of 4 0.60None
Male accessory glands6 20 of 4 1.60None
Virgin spermatheca5 10 of 4 1.29None
Mated spermatheca1 00 of 4 0.31None
Adult carcass4 10 of 4 1.00None
Larval CNS5 20 of 4 1.37None
Larval Salivary gland14 50 of 4 3.58None
Larval midgut8 00 of 4 1.98None
Larval tubule14 10 of 4 3.60Up
Larval hindgut4 20 of 4 1.07None
Larval fat body6 20 of 4 1.60None
Larval trachea14 43 of 4 3.49Up
Larval carcass7 30 of 4 1.82None
S2 cells (growing)6 10 of 4 1.67None
Whole fly4 10 of 4



():

Annotation Number : CG32717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8087267-8133489 (+) // 100.0 //
Probeset : 1631568_a_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
Homophila reports that CG32717 is a close match (2e-38) to human gene DLG3;MRX90;NEDLG;SAP102 (NP_066943), a gene associated with Mental retardation, X-linked-90 (3).
BioGrid reports that CG32717 interacts with CG11579 CG2671 CG5462 .
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain407 104 of 4 4.80Up
Head295 164 of 4 3.50Up
Eye1137 524 of 413.40Up
Thoracicoabdominal ganglion323 104 of 4 3.80Up
Salivary gland449 244 of 4 5.30Up
Crop296 134 of 4 3.50Up
Midgut48 34 of 4 0.60Down
Tubule73 164 of 4 0.90None
Hindgut144 14 of 4 1.70Up
Heart255 114 of 4 3.01Up
Fat body78 124 of 4 0.93None
Ovary67 24 of 4 0.80Down
Testis19 14 of 4 0.20Down
Male accessory glands223 44 of 4 2.60Up
Virgin spermatheca175 94 of 4 2.06Up
Mated spermatheca239 224 of 4 2.82Up
Adult carcass116 84 of 4 1.40Up
Larval CNS264 274 of 4 3.12Up
Larval Salivary gland390 224 of 4 4.60Up
Larval midgut143 24 of 4 1.69Up
Larval tubule134 94 of 4 1.60Up
Larval hindgut266 104 of 4 3.14Up
Larval fat body16 32 of 4 0.20Down
Larval trachea470 574 of 4 5.55Up
Larval carcass151 84 of 4 1.78Up
S2 cells (growing)47 24 of 4 0.56Down
Whole fly84 54 of 4

Looking for FBgn0261873. 6 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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