FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261873 through 18771 annotations produced 6 hits

():

Annotation Number : CT35341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8085175-8086090 (+) // 100.0 //
Probeset : 1635004_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	5.10	Up
Head	2 ± 1	0 of 4	2.20	None
Eye	0 ± 0	0 of 4	0.68	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.10	None
Salivary gland	3 ± 1	0 of 4	3.66	None
Crop	0 ± 0	0 of 4	0.90	None
Midgut	1 ± 0	0 of 4	1.30	None
Tubule	1 ± 0	0 of 4	1.00	None
Hindgut	1 ± 0	0 of 4	1.00	None
Heart	1 ± 0	0 of 4	1.10	None
Fat body	0 ± 0	0 of 4	0.66	None
Ovary	0 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	1.80	None
Male accessory glands	2 ± 1	0 of 4	2.10	None
Virgin spermatheca	0 ± 0	0 of 4	0.83	None
Mated spermatheca	1 ± 1	0 of 4	1.76	None
Adult carcass	2 ± 1	0 of 4	2.50	None
Larval CNS	4 ± 0	0 of 4	4.10	Up
Larval Salivary gland	1 ± 0	0 of 4	1.34	None
Larval midgut	3 ± 0	0 of 4	2.98	None
Larval tubule	1 ± 0	0 of 4	1.20	None
Larval hindgut	0 ± 0	0 of 4	0.88	None
Larval fat body	3 ± 1	0 of 4	3.60	None
Larval trachea	1 ± 1	0 of 4	1.17	None
Larval carcass	0 ± 0	0 of 4	0.54	None
S2 cells (growing)	0 ± 0	0 of 4	0.39	None
Whole fly	1 ± 0	0 of 4

():

Annotation Number : CG32716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8072471-8072972 (+) // 100.0 //
Probeset : 1623665_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	106 ± 5	4 of 4	12.80	Up
Head	22 ± 2	1 of 4	2.70	Up
Eye	15 ± 1	0 of 4	1.88	Up
Thoracicoabdominal ganglion	47 ± 3	4 of 4	5.70	Up
Salivary gland	5 ± 1	0 of 4	0.65	None
Crop	6 ± 0	0 of 4	0.80	None
Midgut	4 ± 2	0 of 4	0.60	None
Tubule	7 ± 0	0 of 4	0.90	None
Hindgut	8 ± 1	0 of 4	1.00	None
Heart	7 ± 0	0 of 4	0.87	None
Fat body	13 ± 2	0 of 4	1.67	Up
Ovary	4 ± 0	0 of 4	0.50	None
Testis	4 ± 0	0 of 4	0.50	Down
Male accessory glands	8 ± 2	0 of 4	1.00	None
Virgin spermatheca	8 ± 2	0 of 4	1.04	None
Mated spermatheca	10 ± 2	2 of 4	1.21	None
Adult carcass	4 ± 2	0 of 4	0.50	None
Larval CNS	35 ± 5	4 of 4	4.19	Up
Larval Salivary gland	3 ± 2	0 of 4	0.44	None
Larval midgut	7 ± 3	0 of 4	0.92	None
Larval tubule	6 ± 0	0 of 4	0.80	None
Larval hindgut	7 ± 1	0 of 4	0.91	None
Larval fat body	7 ± 2	0 of 4	0.90	None
Larval trachea	9 ± 2	1 of 4	1.17	None
Larval carcass	8 ± 1	0 of 4	1.05	None
S2 cells (growing)	5 ± 0	0 of 4	0.61	None
Whole fly	8 ± 1	0 of 4

():

Annotation Number : CT35343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8102587-8104717 (+) // 100.0 //
Probeset : 1633721_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	2.00	None
Head	3 ± 1	0 of 4	1.70	None
Eye	2 ± 0	0 of 4	1.17	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	2.00	None
Salivary gland	4 ± 1	0 of 4	2.39	None
Crop	2 ± 1	0 of 4	1.60	None
Midgut	6 ± 1	0 of 4	3.50	None
Tubule	3 ± 0	0 of 4	2.00	Up
Hindgut	3 ± 1	0 of 4	1.70	None
Heart	2 ± 0	0 of 4	1.14	None
Fat body	3 ± 3	0 of 4	1.89	None
Ovary	1 ± 0	0 of 4	0.60	None
Testis	3 ± 0	1 of 4	1.90	None
Male accessory glands	9 ± 1	0 of 4	5.40	Up
Virgin spermatheca	4 ± 0	0 of 4	2.79	Up
Mated spermatheca	3 ± 1	0 of 4	1.86	None
Adult carcass	5 ± 2	0 of 4	2.80	None
Larval CNS	2 ± 1	0 of 4	1.43	None
Larval Salivary gland	5 ± 1	0 of 4	3.24	None
Larval midgut	4 ± 1	0 of 4	2.80	None
Larval tubule	4 ± 0	0 of 4	2.30	Up
Larval hindgut	3 ± 1	0 of 4	1.99	None
Larval fat body	5 ± 2	0 of 4	3.00	None
Larval trachea	2 ± 0	0 of 4	1.47	None
Larval carcass	2 ± 1	0 of 4	1.21	None
S2 cells (growing)	4 ± 0	0 of 4	2.46	Up
Whole fly	1 ± 0	0 of 4

():

Annotation Number : CT35342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8098067-8098341 (+) // 100.0 //
Probeset : 1631732_s_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 2	0 of 4	3.50	None
Head	2 ± 0	0 of 4	1.80	None
Eye	7 ± 1	1 of 4	6.31	None
Thoracicoabdominal ganglion	3 ± 0	0 of 4	3.40	Up
Salivary gland	13 ± 5	0 of 4	12.22	None
Crop	1 ± 0	0 of 4	1.50	None
Midgut	2 ± 0	0 of 4	2.30	Up
Tubule	4 ± 0	0 of 4	4.30	Up
Hindgut	1 ± 0	0 of 4	1.20	None
Heart	2 ± 0	0 of 4	2.38	None
Fat body	1 ± 0	0 of 4	1.24	None
Ovary	0 ± 0	0 of 4	0.80	None
Testis	3 ± 0	0 of 4	3.20	Up
Male accessory glands	4 ± 1	0 of 4	3.60	None
Virgin spermatheca	2 ± 0	0 of 4	2.38	None
Mated spermatheca	1 ± 0	0 of 4	1.33	None
Adult carcass	5 ± 3	0 of 4	4.60	None
Larval CNS	3 ± 1	0 of 4	2.82	None
Larval Salivary gland	4 ± 1	0 of 4	3.98	None
Larval midgut	5 ± 2	0 of 4	4.56	None
Larval tubule	1 ± 0	0 of 4	1.70	None
Larval hindgut	1 ± 0	0 of 4	1.47	None
Larval fat body	2 ± 0	0 of 4	2.00	None
Larval trachea	3 ± 4	0 of 4	3.29	None
Larval carcass	4 ± 1	0 of 4	3.67	None
S2 cells (growing)	1 ± 0	0 of 4	1.18	None
Whole fly	1 ± 0	0 of 4

():

Annotation Number : CG15342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8124645-8126951 (+) // 100.0 //
Probeset : 1639290_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	1.30	None
Head	8 ± 3	1 of 4	2.00	None
Eye	15 ± 3	1 of 4	3.75	Up
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.80	None
Salivary gland	7 ± 4	0 of 4	1.84	None
Crop	14 ± 2	1 of 4	3.60	Up
Midgut	4 ± 1	0 of 4	1.00	None
Tubule	3 ± 0	0 of 4	0.90	None
Hindgut	6 ± 1	0 of 4	1.70	None
Heart	4 ± 1	0 of 4	1.21	None
Fat body	9 ± 5	0 of 4	2.44	None
Ovary	6 ± 3	0 of 4	1.50	None
Testis	2 ± 0	0 of 4	0.60	None
Male accessory glands	6 ± 2	0 of 4	1.60	None
Virgin spermatheca	5 ± 1	0 of 4	1.29	None
Mated spermatheca	1 ± 0	0 of 4	0.31	None
Adult carcass	4 ± 1	0 of 4	1.00	None
Larval CNS	5 ± 2	0 of 4	1.37	None
Larval Salivary gland	14 ± 5	0 of 4	3.58	None
Larval midgut	8 ± 0	0 of 4	1.98	None
Larval tubule	14 ± 1	0 of 4	3.60	Up
Larval hindgut	4 ± 2	0 of 4	1.07	None
Larval fat body	6 ± 2	0 of 4	1.60	None
Larval trachea	14 ± 4	3 of 4	3.49	Up
Larval carcass	7 ± 3	0 of 4	1.82	None
S2 cells (growing)	6 ± 1	0 of 4	1.67	None
Whole fly	4 ± 1	0 of 4

():

Annotation Number : CG32717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243505
Gbrowse : chrX:8087267-8133489 (+) // 100.0 //
Probeset : 1631568_a_at
Accessions : protein= NP_001033835; /// NP_001033836; /// NP_001036263; /// NP_572463; /// NP_572464; /// NP_996375; /// NP_996376;, nucleotide= NM_001038746; /// NM_001038747; /// NM_001042798; /// NM_132235; /// NM_132236; /// NM_206652; /// NM_206653;
Interpro : 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0243505.
Homophila reports that CG32717 is a close match (2e-38) to human gene DLG3;MRX90;NEDLG;SAP102 (NP_066943), a gene associated with Mental retardation, X-linked-90 (3).
BioGrid reports that CG32717 interacts with CG11579 CG2671 CG5462 .
VDRC has 9 RNAi stocks for FBgn0243505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	407 ± 10	4 of 4	4.80	Up
Head	295 ± 16	4 of 4	3.50	Up
Eye	1137 ± 52	4 of 4	13.40	Up
Thoracicoabdominal ganglion	323 ± 10	4 of 4	3.80	Up
Salivary gland	449 ± 24	4 of 4	5.30	Up
Crop	296 ± 13	4 of 4	3.50	Up
Midgut	48 ± 3	4 of 4	0.60	Down
Tubule	73 ± 16	4 of 4	0.90	None
Hindgut	144 ± 1	4 of 4	1.70	Up
Heart	255 ± 11	4 of 4	3.01	Up
Fat body	78 ± 12	4 of 4	0.93	None
Ovary	67 ± 2	4 of 4	0.80	Down
Testis	19 ± 1	4 of 4	0.20	Down
Male accessory glands	223 ± 4	4 of 4	2.60	Up
Virgin spermatheca	175 ± 9	4 of 4	2.06	Up
Mated spermatheca	239 ± 22	4 of 4	2.82	Up
Adult carcass	116 ± 8	4 of 4	1.40	Up
Larval CNS	264 ± 27	4 of 4	3.12	Up
Larval Salivary gland	390 ± 22	4 of 4	4.60	Up
Larval midgut	143 ± 2	4 of 4	1.69	Up
Larval tubule	134 ± 9	4 of 4	1.60	Up
Larval hindgut	266 ± 10	4 of 4	3.14	Up
Larval fat body	16 ± 3	2 of 4	0.20	Down
Larval trachea	470 ± 57	4 of 4	5.55	Up
Larval carcass	151 ± 8	4 of 4	1.78	Up
S2 cells (growing)	47 ± 2	4 of 4	0.56	Down
Whole fly	84 ± 5	4 of 4

Looking for FBgn0261873. 6 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720