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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261882 through 18771 annotations produced 1 hits



():

Annotation Number : CG4103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028925
Gbrowse : chr2L:15008681-15009597 (-) // 100.0 //
Probeset : 1638118_at
Accessions : protein= NP_609737;, nucleotide= NM_135893;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008193 // tRNA guanylyltransferase activity // inf
FlyMine data for FBgn0028925.
BioGrid reports that CG4103 interacts with CG4528 .
VDRC has 3 RNAi stocks for FBgn0028925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 14 of 4 0.80Down
Head20 ± 24 of 4 0.60Down
Eye14 ± 03 of 4 0.46Down
Thoracicoabdominal ganglion22 ± 14 of 4 0.70Down
Salivary gland29 ± 24 of 4 0.94None
Crop30 ± 14 of 4 1.00None
Midgut35 ± 14 of 4 1.10None
Tubule15 ± 13 of 4 0.50Down
Hindgut22 ± 04 of 4 0.70Down
Heart17 ± 04 of 4 0.54Down
Fat body26 ± 64 of 4 0.82None
Ovary53 ± 14 of 4 1.70Up
Testis7 ± 11 of 4 0.20Down
Male accessory glands15 ± 22 of 4 0.50Down
Virgin spermatheca14 ± 23 of 4 0.44Down
Mated spermatheca15 ± 20 of 4 0.48Down
Adult carcass24 ± 23 of 4 0.80None
Larval CNS37 ± 24 of 4 1.18None
Larval Salivary gland26 ± 34 of 4 0.84None
Larval midgut21 ± 14 of 4 0.68Down
Larval tubule24 ± 14 of 4 0.80None
Larval hindgut21 ± 14 of 4 0.68Down
Larval fat body24 ± 34 of 4 0.80None
Larval trachea26 ± 34 of 4 0.83None
Larval carcass27 ± 14 of 4 0.86None
S2 cells (growing)52 ± 14 of 4 1.64Up
Whole fly31 ± 24 of 4

Looking for FBgn0261882. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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