Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261929 through 18771 annotations produced 1 hits



():

Annotation Number : CG8007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037600
Gbrowse : chr3R:4445476-4452743 (+) // 100.0 //
Probeset : 1629925_a_at
Accessions : protein= NP_649806; /// NP_731257;, nucleotide= NM_141549; /// NM_169229;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0037600.
Homophila reports that CG8007 is a close match (3e-11) to human gene ADRB1;ADRB1R;RHR (NP_000675), a gene associated with [Resting heart rate], 607276 (3);{congestive heart failure, susceptibility to} (3).
VDRC has 5 RNAi stocks for FBgn0037600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 20 of 4 9.10Up
Head3 ± 10 of 4 4.30None
Eye4 ± 20 of 4 4.78None
Thoracicoabdominal ganglion4 ± 10 of 4 4.70None
Salivary gland2 ± 00 of 4 3.03Up
Crop2 ± 00 of 4 2.70Up
Midgut1 ± 00 of 4 1.80None
Tubule4 ± 20 of 4 4.90None
Hindgut3 ± 10 of 4 4.40None
Heart2 ± 00 of 4 3.25None
Fat body2 ± 00 of 4 2.67Up
Ovary1 ± 00 of 4 1.50None
Testis2 ± 00 of 4 3.10Up
Male accessory glands3 ± 00 of 4 3.80Up
Virgin spermatheca2 ± 00 of 4 3.17Up
Mated spermatheca2 ± 00 of 4 2.50Up
Adult carcass3 ± 00 of 4 3.30Up
Larval CNS1 ± 00 of 4 1.47None
Larval Salivary gland2 ± 00 of 4 3.17Up
Larval midgut1 ± 00 of 4 2.03Up
Larval tubule1 ± 00 of 4 1.80Up
Larval hindgut1 ± 00 of 4 1.64Up
Larval fat body3 ± 00 of 4 3.40Up
Larval trachea2 ± 00 of 4 3.11Up
Larval carcass2 ± 00 of 4 2.36Up
S2 cells (growing)3 ± 10 of 4 3.81None
Whole fly0 ± 00 of 4

Looking for FBgn0261929. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime