FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261930 through 18771 annotations produced 2 hits

():

Annotation Number : HDC16822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003986
Gbrowse : chrX:476991-478434 (+) // 100.0 //
Probeset : 1638759_at
Accessions : protein= NP_001036253; /// NP_476786;, nucleotide= NM_001042788; /// NM_057438;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0003986.
VDRC has 2 RNAi stocks for FBgn0003986 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.40	Down
Head	1 ± 1	0 of 4	0.50	None
Eye	2 ± 1	0 of 4	0.83	None
Thoracicoabdominal ganglion	1 ± 1	0 of 4	0.60	None
Salivary gland	6 ± 2	0 of 4	1.84	None
Crop	4 ± 1	1 of 4	1.40	None
Midgut	15 ± 2	4 of 4	4.70	Up
Tubule	1 ± 0	0 of 4	0.60	Down
Hindgut	1 ± 0	0 of 4	0.40	None
Heart	1 ± 0	0 of 4	0.61	None
Fat body	1 ± 2	0 of 4	0.53	None
Ovary	0 ± 0	0 of 4	0.30	Down
Testis	0 ± 0	0 of 4	0.30	Down
Male accessory glands	3 ± 1	0 of 4	1.10	None
Virgin spermatheca	2 ± 1	0 of 4	0.71	None
Mated spermatheca	2 ± 1	0 of 4	0.68	None
Adult carcass	0 ± 0	0 of 4	0.20	Down
Larval CNS	0 ± 0	0 of 4	0.22	Down
Larval Salivary gland	3 ± 1	0 of 4	1.03	None
Larval midgut	4 ± 1	0 of 4	1.53	None
Larval tubule	0 ± 0	0 of 4	0.10	Down
Larval hindgut	2 ± 1	0 of 4	0.89	None
Larval fat body	2 ± 1	0 of 4	0.80	None
Larval trachea	0 ± 1	0 of 4	0.25	Down
Larval carcass	1 ± 0	0 of 4	0.49	None
S2 cells (growing)	0 ± 0	0 of 4	0.30	Down
Whole fly	3 ± 0	0 of 4

chrX:485074-491855 (+) // 100.0 // ():

Annotation Number : CG6172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635383_at
Accessions : protein= , nucleotide= NP_001036253; /// NP_476786;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG6172 is a close match (4e-11) to human gene CRS2;HOX8;MSX2 (NP_002440), a gene associated with Craniosynostosis, type 2, 604757 (3);Parietal foramina 1, 168500 (3);Parietal foramina with cleidocranial dysplasia, 168550 (3).
BioGrid reports that CG6172 interacts with CG7010 CG7054 CG7823 CG9745 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	0 of 4	0.30	Down
Head	4 ± 1	1 of 4	0.20	Down
Eye	3 ± 1	0 of 4	0.16	Down
Thoracicoabdominal ganglion	10 ± 2	1 of 4	0.50	Down
Salivary gland	18 ± 7	0 of 4	0.81	None
Crop	2 ± 0	0 of 4	0.10	Down
Midgut	289 ± 13	4 of 4	13.00	Up
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	6 ± 1	1 of 4	0.30	Down
Heart	1 ± 0	0 of 4	0.08	Down
Fat body	12 ± 4	2 of 4	0.54	None
Ovary	3 ± 0	0 of 4	0.20	Down
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	8 ± 2	0 of 4	0.40	Down
Virgin spermatheca	8 ± 1	0 of 4	0.37	Down
Mated spermatheca	7 ± 1	0 of 4	0.35	Down
Adult carcass	8 ± 3	0 of 4	0.40	Down
Larval CNS	17 ± 4	4 of 4	0.80	None
Larval Salivary gland	11 ± 2	1 of 4	0.51	Down
Larval midgut	104 ± 12	4 of 4	4.68	Up
Larval tubule	3 ± 2	0 of 4	0.10	Down
Larval hindgut	5 ± 1	0 of 4	0.24	Down
Larval fat body	12 ± 1	0 of 4	0.60	Down
Larval trachea	1 ± 0	0 of 4	0.05	Down
Larval carcass	6 ± 0	0 of 4	0.28	Down
S2 cells (growing)	7 ± 1	0 of 4	0.36	Down
Whole fly	22 ± 3	4 of 4

Looking for FBgn0261930. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720