FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261931 through 18771 annotations produced 2 hits

():

Annotation Number : CG3099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030145
Gbrowse : chrX:9513785-9515700 (+) // 100.0 //
Probeset : 1630123_at
Accessions : protein= NP_572575;, nucleotide= NM_132347;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0030145.
Homophila reports that CG3099 is a close match (4e-25) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
BioGrid reports that CG3099 interacts with CG4747 CG3314 CG3751 CG3919 CG3937 CG4265 CG4863 CG7172 CG7615 CG7757 CG7937 CG9277 CG9527 Dmel CG17162 .
VDRC has 5 RNAi stocks for FBgn0030145 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	50 ± 1	4 of 4	0.90	None
Head	18 ± 4	2 of 4	0.30	Down
Eye	16 ± 3	3 of 4	0.29	Down
Thoracicoabdominal ganglion	59 ± 8	4 of 4	1.00	None
Salivary gland	19 ± 4	0 of 4	0.35	Down
Crop	21 ± 2	4 of 4	0.40	Down
Midgut	17 ± 1	2 of 4	0.30	Down
Tubule	8 ± 2	0 of 4	0.20	Down
Hindgut	13 ± 2	0 of 4	0.20	Down
Heart	15 ± 2	1 of 4	0.28	Down
Fat body	16 ± 3	1 of 4	0.29	Down
Ovary	102 ± 3	4 of 4	1.80	Up
Testis	133 ± 2	4 of 4	2.40	Up
Male accessory glands	14 ± 1	1 of 4	0.30	Down
Virgin spermatheca	10 ± 0	0 of 4	0.19	Down
Mated spermatheca	14 ± 5	1 of 4	0.25	Down
Adult carcass	15 ± 4	0 of 4	0.30	Down
Larval CNS	42 ± 3	4 of 4	0.76	Down
Larval Salivary gland	19 ± 4	2 of 4	0.35	Down
Larval midgut	21 ± 5	2 of 4	0.38	Down
Larval tubule	14 ± 0	1 of 4	0.30	Down
Larval hindgut	15 ± 2	4 of 4	0.27	Down
Larval fat body	34 ± 11	3 of 4	0.60	None
Larval trachea	23 ± 4	4 of 4	0.42	Down
Larval carcass	14 ± 3	1 of 4	0.26	Down
S2 cells (growing)	39 ± 2	4 of 4	0.71	Down
Whole fly	56 ± 4	4 of 4

():

Annotation Number : CG3003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030144
Gbrowse : chrX:9502992-9506638 (+) // 100.0 //
Probeset : 1640891_at
Accessions : protein= NP_572574;, nucleotide= NM_132346;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030144.
BioGrid reports that CG3003 interacts with CG4147 .
VDRC has 5 RNAi stocks for FBgn0030144 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 2	3 of 4	1.00	None
Head	16 ± 3	2 of 4	0.80	None
Eye	7 ± 0	2 of 4	0.36	Down
Thoracicoabdominal ganglion	26 ± 3	4 of 4	1.20	None
Salivary gland	41 ± 10	0 of 4	1.89	None
Crop	15 ± 3	2 of 4	0.70	None
Midgut	30 ± 3	3 of 4	1.40	None
Tubule	14 ± 2	2 of 4	0.70	Down
Hindgut	11 ± 1	0 of 4	0.50	Down
Heart	8 ± 1	0 of 4	0.38	Down
Fat body	23 ± 6	1 of 4	1.07	None
Ovary	24 ± 0	4 of 4	1.10	None
Testis	12 ± 2	1 of 4	0.50	Down
Male accessory glands	25 ± 3	2 of 4	1.20	None
Virgin spermatheca	21 ± 4	0 of 4	0.98	None
Mated spermatheca	15 ± 2	0 of 4	0.69	Down
Adult carcass	19 ± 3	0 of 4	0.90	None
Larval CNS	15 ± 2	4 of 4	0.71	Down
Larval Salivary gland	31 ± 4	0 of 4	1.42	None
Larval midgut	33 ± 4	0 of 4	1.50	None
Larval tubule	14 ± 1	0 of 4	0.70	Down
Larval hindgut	14 ± 1	0 of 4	0.68	Down
Larval fat body	28 ± 5	0 of 4	1.30	None
Larval trachea	8 ± 4	2 of 4	0.39	Down
Larval carcass	24 ± 2	0 of 4	1.10	None
S2 cells (growing)	21 ± 2	3 of 4	0.99	None
Whole fly	22 ± 1	4 of 4

Looking for FBgn0261931. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720