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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261931 through 18771 annotations produced 2 hits



():

Annotation Number : CG3003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030144
Gbrowse : chrX:9502992-9506638 (+) // 100.0 //
Probeset : 1640891_at
Accessions : protein= NP_572574;, nucleotide= NM_132346;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030144.
BioGrid reports that CG3003 interacts with CG4147 .
VDRC has 5 RNAi stocks for FBgn0030144 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 23 of 4 1.00None
Head16 32 of 4 0.80None
Eye7 02 of 4 0.36Down
Thoracicoabdominal ganglion26 34 of 4 1.20None
Salivary gland41 100 of 4 1.89None
Crop15 32 of 4 0.70None
Midgut30 33 of 4 1.40None
Tubule14 22 of 4 0.70Down
Hindgut11 10 of 4 0.50Down
Heart8 10 of 4 0.38Down
Fat body23 61 of 4 1.07None
Ovary24 04 of 4 1.10None
Testis12 21 of 4 0.50Down
Male accessory glands25 32 of 4 1.20None
Virgin spermatheca21 40 of 4 0.98None
Mated spermatheca15 20 of 4 0.69Down
Adult carcass19 30 of 4 0.90None
Larval CNS15 24 of 4 0.71Down
Larval Salivary gland31 40 of 4 1.42None
Larval midgut33 40 of 4 1.50None
Larval tubule14 10 of 4 0.70Down
Larval hindgut14 10 of 4 0.68Down
Larval fat body28 50 of 4 1.30None
Larval trachea8 42 of 4 0.39Down
Larval carcass24 20 of 4 1.10None
S2 cells (growing)21 23 of 4 0.99None
Whole fly22 14 of 4



():

Annotation Number : CG3099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030145
Gbrowse : chrX:9513785-9515700 (+) // 100.0 //
Probeset : 1630123_at
Accessions : protein= NP_572575;, nucleotide= NM_132347;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0030145.
Homophila reports that CG3099 is a close match (4e-25) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
BioGrid reports that CG3099 interacts with CG4747 CG3314 CG3751 CG3919 CG3937 CG4265 CG4863 CG7172 CG7615 CG7757 CG7937 CG9277 CG9527 Dmel CG17162 .
VDRC has 5 RNAi stocks for FBgn0030145 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 14 of 4 0.90None
Head18 42 of 4 0.30Down
Eye16 33 of 4 0.29Down
Thoracicoabdominal ganglion59 84 of 4 1.00None
Salivary gland19 40 of 4 0.35Down
Crop21 24 of 4 0.40Down
Midgut17 12 of 4 0.30Down
Tubule8 20 of 4 0.20Down
Hindgut13 20 of 4 0.20Down
Heart15 21 of 4 0.28Down
Fat body16 31 of 4 0.29Down
Ovary102 34 of 4 1.80Up
Testis133 24 of 4 2.40Up
Male accessory glands14 11 of 4 0.30Down
Virgin spermatheca10 00 of 4 0.19Down
Mated spermatheca14 51 of 4 0.25Down
Adult carcass15 40 of 4 0.30Down
Larval CNS42 34 of 4 0.76Down
Larval Salivary gland19 42 of 4 0.35Down
Larval midgut21 52 of 4 0.38Down
Larval tubule14 01 of 4 0.30Down
Larval hindgut15 24 of 4 0.27Down
Larval fat body34 113 of 4 0.60None
Larval trachea23 44 of 4 0.42Down
Larval carcass14 31 of 4 0.26Down
S2 cells (growing)39 24 of 4 0.71Down
Whole fly56 44 of 4

Looking for FBgn0261931. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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