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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261938 through 18771 annotations produced 1 hits



():

Annotation Number : CG4644
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031300
Gbrowse : chr2L:1103482-1108369 (-) // 100.0 //
Probeset : 1626738_at
Accessions : protein= NP_608565;, nucleotide= NM_134721;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0031300.
VDRC has 1 RNAi stocks for FBgn0031300 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 34 of 4 1.10None
Head57 ± 24 of 4 0.70Down
Eye43 ± 34 of 4 0.54Down
Thoracicoabdominal ganglion90 ± 54 of 4 1.10None
Salivary gland54 ± 54 of 4 0.68Down
Crop67 ± 44 of 4 0.80Down
Midgut60 ± 34 of 4 0.70Down
Tubule49 ± 14 of 4 0.60Down
Hindgut78 ± 14 of 4 1.00None
Heart47 ± 34 of 4 0.59Down
Fat body53 ± 34 of 4 0.66Down
Ovary106 ± 24 of 4 1.30Up
Testis58 ± 34 of 4 0.70Down
Male accessory glands43 ± 24 of 4 0.50Down
Virgin spermatheca44 ± 24 of 4 0.55Down
Mated spermatheca48 ± 64 of 4 0.59Down
Adult carcass107 ± 74 of 4 1.30Up
Larval CNS53 ± 64 of 4 0.65Down
Larval Salivary gland41 ± 34 of 4 0.51Down
Larval midgut42 ± 34 of 4 0.52Down
Larval tubule16 ± 14 of 4 0.20Down
Larval hindgut62 ± 64 of 4 0.77Down
Larval fat body20 ± 23 of 4 0.20Down
Larval trachea44 ± 84 of 4 0.55Down
Larval carcass47 ± 74 of 4 0.59Down
S2 cells (growing)96 ± 64 of 4 1.19None
Whole fly81 ± 34 of 4

Looking for FBgn0261938. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime