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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261953 through 18771 annotations produced 1 hits



():

Annotation Number : CG7807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023417
Gbrowse : chr3L:21591957-21606453 (+) // 100.0 //
Probeset : 1631372_a_at
Accessions : protein= NP_649336; /// NP_730664;, nucleotide= NM_141079; /// NM_168927;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0023417.
BDGP gene expression has embryonic in situ data for AP-2: 32 pix of staining in 7 body parts.
Homophila reports that CG7807 is a close match (4e-73) to human gene TFAP2B;CHAR (NP_003212), a gene associated with Char syndrome, 169100 (3).
BioGrid reports that CG7807 interacts with CG3936 .
VDRC has 3 RNAi stocks for FBgn0023417 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 34 of 425.20Up
Head41 34 of 4 5.10Up
Eye6 21 of 4 0.77None
Thoracicoabdominal ganglion20 14 of 4 2.50Up
Salivary gland1 00 of 4 0.24Down
Crop8 10 of 4 1.00None
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.40Down
Hindgut1 00 of 4 0.10Down
Heart0 00 of 4 0.07Down
Fat body3 20 of 4 0.44None
Ovary0 00 of 4 0.10Down
Testis3 10 of 4 0.40None
Male accessory glands16 21 of 4 2.00None
Virgin spermatheca0 00 of 4 0.11Down
Mated spermatheca2 00 of 4 0.26Down
Adult carcass4 10 of 4 0.60None
Larval CNS201 214 of 424.90Up
Larval Salivary gland1 10 of 4 0.21Down
Larval midgut2 10 of 4 0.26Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut1 00 of 4 0.20Down
Larval fat body4 10 of 4 0.50None
Larval trachea1 20 of 4 0.20Down
Larval carcass18 40 of 4 2.28None
S2 cells (growing)0 00 of 4 0.07Down
Whole fly8 10 of 4

Looking for FBgn0261953. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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