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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261954 through 18771 annotations produced 1 hits



():

Annotation Number : CG4399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010110
Gbrowse : chrX:1906356-1916685 (+) // 99.92 //
Probeset : 1624378_at
Accessions : protein= NP_524864;, nucleotide= NM_080125;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferre
FlyMine data for FBgn0010110.
VDRC has 2 RNAi stocks for FBgn0010110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain423 ± 124 of 4 4.00Up
Head127 ± 134 of 4 1.20None
Eye153 ± 44 of 4 1.45Up
Thoracicoabdominal ganglion489 ± 154 of 4 4.60Up
Salivary gland114 ± 184 of 4 1.09None
Crop137 ± 44 of 4 1.30None
Midgut77 ± 24 of 4 0.70None
Tubule65 ± 24 of 4 0.60Down
Hindgut116 ± 74 of 4 1.10None
Heart97 ± 24 of 4 0.92None
Fat body126 ± 214 of 4 1.20None
Ovary264 ± 44 of 4 2.50Up
Testis31 ± 24 of 4 0.30Down
Male accessory glands186 ± 54 of 4 1.80Up
Virgin spermatheca51 ± 44 of 4 0.49Down
Mated spermatheca46 ± 04 of 4 0.44Down
Adult carcass121 ± 144 of 4 1.10None
Larval CNS450 ± 384 of 4 4.25Up
Larval Salivary gland229 ± 154 of 4 2.16Up
Larval midgut77 ± 64 of 4 0.73None
Larval tubule155 ± 94 of 4 1.50Up
Larval hindgut136 ± 64 of 4 1.29None
Larval fat body76 ± 54 of 4 0.70None
Larval trachea152 ± 44 of 4 1.44Up
Larval carcass148 ± 124 of 4 1.40None
S2 cells (growing)179 ± 64 of 4 1.70Up
Whole fly105 ± 124 of 4

Looking for FBgn0261954. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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