FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261955 through 18771 annotations produced 1 hits

():

Annotation Number : CG3861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086133
Gbrowse : chrX:6244661-6255226 (+) // 100.0 //
Probeset : 1623252_a_at
Accessions : protein= NP_572319; /// NP_727091;, nucleotide= NM_132091; /// NM_167072;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from ele
Interpro : "0004108 // citrate (Si)-synthase activity // inferred from electronic annotation /// 0004108 // citrate (Si)-synthase a
FlyMine data for FBgn0086133.
BioGrid reports that CG3861 interacts with CG9797 .
VDRC has 3 RNAi stocks for FBgn0086133 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	959 ± 44	4 of 4	1.00	None
Head	1275 ± 44	4 of 4	1.30	Up
Eye	969 ± 16	4 of 4	1.02	None
Thoracicoabdominal ganglion	1169 ± 27	4 of 4	1.20	Up
Salivary gland	3815 ± 106	4 of 4	4.03	Up
Crop	1062 ± 27	4 of 4	1.10	None
Midgut	1238 ± 34	4 of 4	1.30	Up
Tubule	724 ± 54	4 of 4	0.80	Down
Hindgut	1897 ± 78	4 of 4	2.00	Up
Heart	1374 ± 107	4 of 4	1.45	Up
Fat body	2800 ± 377	4 of 4	2.95	Up
Ovary	534 ± 9	4 of 4	0.60	Down
Testis	303 ± 21	4 of 4	0.30	Down
Male accessory glands	538 ± 43	4 of 4	0.60	Down
Virgin spermatheca	391 ± 45	4 of 4	0.41	Down
Mated spermatheca	519 ± 27	4 of 4	0.55	Down
Adult carcass	2554 ± 99	4 of 4	2.70	Up
Larval CNS	861 ± 29	4 of 4	0.91	None
Larval Salivary gland	652 ± 44	4 of 4	0.69	Down
Larval midgut	2197 ± 180	4 of 4	2.32	Up
Larval tubule	412 ± 31	4 of 4	0.40	Down
Larval hindgut	3240 ± 165	4 of 4	3.42	Up
Larval fat body	81 ± 11	4 of 4	0.10	Down
Larval trachea	235 ± 14	4 of 4	0.25	Down
Larval carcass	2542 ± 247	4 of 4	2.68	Up
S2 cells (growing)	647 ± 30	4 of 4	0.68	Down
Whole fly	947 ± 67	4 of 4

Looking for FBgn0261955. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720