FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261976 through 18771 annotations produced 1 hits

():

Annotation Number : CG18013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031599
Gbrowse : chr2L:4386175-4387046 (-) // 100.0 //
Probeset : 1628599_at
Accessions : protein= NP_608826;, nucleotide= NM_134982;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0003711 // transcription elongation regulator activity // inferred from sequence or structural similarity /// 0005515 //
FlyMine data for FBgn0031599.
BDGP gene expression has embryonic in situ data for CG18013: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031599 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	4 of 4	0.10	Down
Head	61 ± 2	4 of 4	0.50	Down
Eye	42 ± 6	4 of 4	0.36	Down
Thoracicoabdominal ganglion	24 ± 1	4 of 4	0.20	Down
Salivary gland	82 ± 3	4 of 4	0.71	Down
Crop	47 ± 3	4 of 4	0.40	Down
Midgut	32 ± 2	4 of 4	0.30	Down
Tubule	1219 ± 25	4 of 4	10.50	Up
Hindgut	61 ± 1	4 of 4	0.50	Down
Heart	154 ± 19	4 of 4	1.33	None
Fat body	200 ± 8	4 of 4	1.72	Up
Ovary	163 ± 9	4 of 4	1.40	Up
Testis	15 ± 1	4 of 4	0.10	Down
Male accessory glands	64 ± 4	4 of 4	0.60	Down
Virgin spermatheca	440 ± 36	4 of 4	3.78	Up
Mated spermatheca	302 ± 29	4 of 4	2.59	Up
Adult carcass	92 ± 5	4 of 4	0.80	None
Larval CNS	77 ± 3	4 of 4	0.67	Down
Larval Salivary gland	61 ± 6	4 of 4	0.53	Down
Larval midgut	32 ± 2	4 of 4	0.28	Down
Larval tubule	56 ± 4	4 of 4	0.50	Down
Larval hindgut	48 ± 2	4 of 4	0.42	Down
Larval fat body	55 ± 4	4 of 4	0.50	Down
Larval trachea	72 ± 7	4 of 4	0.62	Down
Larval carcass	38 ± 3	4 of 4	0.33	Down
S2 cells (growing)	86 ± 2	4 of 4	0.74	Down
Whole fly	116 ± 9	4 of 4

Looking for FBgn0261976. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720