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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261976 through 18771 annotations produced 1 hits



():

Annotation Number : CG18013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031599
Gbrowse : chr2L:4386175-4387046 (-) // 100.0 //
Probeset : 1628599_at
Accessions : protein= NP_608826;, nucleotide= NM_134982;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0003711 // transcription elongation regulator activity // inferred from sequence or structural similarity /// 0005515 //
FlyMine data for FBgn0031599.
BDGP gene expression has embryonic in situ data for CG18013: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031599 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 0.10Down
Head61 24 of 4 0.50Down
Eye42 64 of 4 0.36Down
Thoracicoabdominal ganglion24 14 of 4 0.20Down
Salivary gland82 34 of 4 0.71Down
Crop47 34 of 4 0.40Down
Midgut32 24 of 4 0.30Down
Tubule1219 254 of 410.50Up
Hindgut61 14 of 4 0.50Down
Heart154 194 of 4 1.33None
Fat body200 84 of 4 1.72Up
Ovary163 94 of 4 1.40Up
Testis15 14 of 4 0.10Down
Male accessory glands64 44 of 4 0.60Down
Virgin spermatheca440 364 of 4 3.78Up
Mated spermatheca302 294 of 4 2.59Up
Adult carcass92 54 of 4 0.80None
Larval CNS77 34 of 4 0.67Down
Larval Salivary gland61 64 of 4 0.53Down
Larval midgut32 24 of 4 0.28Down
Larval tubule56 44 of 4 0.50Down
Larval hindgut48 24 of 4 0.42Down
Larval fat body55 44 of 4 0.50Down
Larval trachea72 74 of 4 0.62Down
Larval carcass38 34 of 4 0.33Down
S2 cells (growing)86 24 of 4 0.74Down
Whole fly116 94 of 4

Looking for FBgn0261976. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime