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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261983 through 18771 annotations produced 1 hits



():

Annotation Number : CG4713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250747
Gbrowse : chr2L:11106951-11110852 (+) // 100.0 //
Probeset : 1635818_at
Accessions : protein= NP_609488;, nucleotide= NM_135644;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
FlyMine data for FBgn0250747.
Homophila reports that CG4713 is a close match (1e-86) to human gene CC2D1A;MRT3 (NP_060191), a gene associated with Mental retardation, autosomal recessive 3, 608443 (3).
VDRC has 1 RNAi stocks for FBgn0250747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 ± 54 of 4 1.50Up
Head137 ± 34 of 4 1.30Up
Eye174 ± 54 of 4 1.63Up
Thoracicoabdominal ganglion191 ± 24 of 4 1.80Up
Salivary gland183 ± 154 of 4 1.71Up
Crop212 ± 64 of 4 2.00Up
Midgut145 ± 24 of 4 1.40Up
Tubule285 ± 194 of 4 2.70Up
Hindgut154 ± 24 of 4 1.40Up
Heart144 ± 104 of 4 1.35Up
Fat body124 ± 144 of 4 1.16None
Ovary206 ± 44 of 4 1.90Up
Testis35 ± 14 of 4 0.30Down
Male accessory glands164 ± 54 of 4 1.50Up
Virgin spermatheca216 ± 84 of 4 2.02Up
Mated spermatheca277 ± 34 of 4 2.60Up
Adult carcass117 ± 34 of 4 1.10None
Larval CNS173 ± 104 of 4 1.62Up
Larval Salivary gland273 ± 44 of 4 2.56Up
Larval midgut188 ± 144 of 4 1.76Up
Larval tubule518 ± 74 of 4 4.80Up
Larval hindgut246 ± 114 of 4 2.30Up
Larval fat body220 ± 94 of 4 2.10Up
Larval trachea233 ± 114 of 4 2.18Up
Larval carcass188 ± 154 of 4 1.76Up
S2 cells (growing)268 ± 64 of 4 2.51Up
Whole fly107 ± 54 of 4

Looking for FBgn0261983. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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