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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261987 through 18771 annotations produced 1 hits



():

Annotation Number : CG7660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038538
Gbrowse : chr3R:13545195-13548679 (+) // 100.0 //
Probeset : 1631331_a_at
Accessions : protein= NP_650648;, nucleotide= NM_142391;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // inferred fro
FlyMine data for FBgn0038538.
BDGP gene expression has embryonic in situ data for pxt: 11 pix of staining in 5 body parts.
Homophila reports that CG7660 is a close match (9e-18) to human gene DUOX2;THOX2 (NP_054799), a gene associated with Hypothyroidism, congenital, due to DUOX2 deficiency, 607200 (3).
BioGrid reports that CG7660 interacts with CG8368 .
VDRC has 3 RNAi stocks for FBgn0038538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye5 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland10 ± 41 of 4 0.01Down
Crop7 ± 10 of 4 0.00Down
Midgut7 ± 11 of 4 0.00Down
Tubule30 ± 220 of 4 0.00Down
Hindgut8 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.00Down
Fat body21 ± 72 of 4 0.02Down
Ovary1559 ± 304 of 4 1.70Up
Testis6 ± 10 of 4 0.00Down
Male accessory glands10 ± 22 of 4 0.00Down
Virgin spermatheca19 ± 23 of 4 0.02Down
Mated spermatheca13 ± 61 of 4 0.01Down
Adult carcass56 ± 194 of 4 0.10Down
Larval CNS6 ± 12 of 4 0.01Down
Larval Salivary gland7 ± 10 of 4 0.01Down
Larval midgut8 ± 21 of 4 0.01Down
Larval tubule8 ± 00 of 4 0.00Down
Larval hindgut6 ± 00 of 4 0.01Down
Larval fat body13 ± 20 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.00Down
Larval carcass2 ± 10 of 4 0.00Down
S2 cells (growing)8 ± 00 of 4 0.01Down
Whole fly898 ± 584 of 4

Looking for FBgn0261987. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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