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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261988 through 18771 annotations produced 1 hits



():

Annotation Number : CG17998
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004834
Gbrowse : chr3R:27230970-27283499 (+) // 100.0 //
Probeset : 1624042_at
Accessions : protein= NP_476867;, nucleotide= NM_057519;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0004834.
Homophila reports that CG17998 is a close match (8e-11) to human gene EIF2AK3;PEK;PERK;WRS (NP_004827), a gene associated with Wolcott-Rallison syndrome, 226980 (3).
BioGrid reports that CG17998 interacts with CG33529 CG32498 .
VDRC has 3 RNAi stocks for FBgn0004834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 34 of 4 3.70Up
Head85 64 of 4 1.60Up
Eye107 24 of 4 1.98Up
Thoracicoabdominal ganglion154 14 of 4 2.90Up
Salivary gland92 84 of 4 1.70Up
Crop113 34 of 4 2.10Up
Midgut36 14 of 4 0.70Down
Tubule34 43 of 4 0.60Down
Hindgut172 64 of 4 3.20Up
Heart76 94 of 4 1.41None
Fat body60 44 of 4 1.12None
Ovary101 44 of 4 1.90Up
Testis13 04 of 4 0.20Down
Male accessory glands36 14 of 4 0.70Down
Virgin spermatheca82 74 of 4 1.51Up
Mated spermatheca78 64 of 4 1.45Up
Adult carcass58 54 of 4 1.10None
Larval CNS281 174 of 4 5.19Up
Larval Salivary gland110 64 of 4 2.03Up
Larval midgut71 54 of 4 1.32Up
Larval tubule52 24 of 4 1.00None
Larval hindgut75 24 of 4 1.39Up
Larval fat body250 244 of 4 4.60Up
Larval trachea105 214 of 4 1.94Up
Larval carcass73 24 of 4 1.36Up
S2 cells (growing)235 94 of 4 4.34Up
Whole fly54 34 of 4

Looking for FBgn0261988. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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