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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261993 through 18771 annotations produced 1 hits



():

Annotation Number : CG18669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040599
Gbrowse : chr3R:20192248-20194050 (-) // 100.0 //
Probeset : 1636181_at
Accessions : protein= NP_001097901;, nucleotide= NM_001104431;
FlyMine data for FBgn0040599.
VDRC has 1 RNAi stocks for FBgn0040599 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 5.40None
Head0 ± 00 of 4 1.10None
Eye1 ± 00 of 4 4.92Up
Thoracicoabdominal ganglion1 ± 00 of 4 3.00None
Salivary gland3 ± 10 of 4 9.23None
Crop0 ± 00 of 4 2.40None
Midgut2 ± 00 of 4 6.20Up
Tubule2 ± 00 of 4 6.50Up
Hindgut1 ± 00 of 4 3.20None
Heart1 ± 10 of 4 5.00None
Fat body1 ± 10 of 4 5.54None
Ovary0 ± 00 of 4 1.20None
Testis0 ± 00 of 4 2.70None
Male accessory glands2 ± 00 of 4 6.50None
Virgin spermatheca2 ± 00 of 4 7.77None
Mated spermatheca1 ± 00 of 4 4.31Up
Adult carcass0 ± 00 of 4 2.00None
Larval CNS0 ± 00 of 4 1.62None
Larval Salivary gland0 ± 00 of 4 2.54None
Larval midgut1 ± 00 of 4 4.00None
Larval tubule0 ± 00 of 4 2.00Up
Larval hindgut1 ± 00 of 4 3.31None
Larval fat body0 ± 00 of 4 2.20Up
Larval trachea0 ± 00 of 4 1.54None
Larval carcass0 ± 00 of 4 2.31Up
S2 cells (growing)0 ± 00 of 4 1.77None
Whole fly0 ± 00 of 4

Looking for FBgn0261993. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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