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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261995 through 18771 annotations produced 1 hits



():

Annotation Number : CG31063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051063
Gbrowse : chr3R:23053159-23055146 (-) // 100.0 //
Probeset : 1637733_at
Accessions : protein= NP_733202;, nucleotide= NM_170323;
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from ele
FlyMine data for FBgn0051063.
BioGrid reports that CG31063 interacts with CG6170 .
VDRC has 3 RNAi stocks for FBgn0051063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain269 ± 24 of 4 1.00None
Head319 ± 174 of 4 1.20None
Eye529 ± 224 of 4 1.94Up
Thoracicoabdominal ganglion405 ± 74 of 4 1.50Up
Salivary gland711 ± 144 of 4 2.60Up
Crop336 ± 114 of 4 1.20Up
Midgut486 ± 104 of 4 1.80Up
Tubule1413 ± 544 of 4 5.20Up
Hindgut506 ± 104 of 4 1.80Up
Heart340 ± 124 of 4 1.24Up
Fat body436 ± 114 of 4 1.60Up
Ovary200 ± 14 of 4 0.70Down
Testis337 ± 124 of 4 1.20Up
Male accessory glands556 ± 274 of 4 2.00Up
Virgin spermatheca404 ± 114 of 4 1.48Up
Mated spermatheca355 ± 144 of 4 1.30Up
Adult carcass331 ± 164 of 4 1.20None
Larval CNS248 ± 214 of 4 0.91None
Larval Salivary gland144 ± 84 of 4 0.53Down
Larval midgut424 ± 124 of 4 1.55Up
Larval tubule624 ± 534 of 4 2.30Up
Larval hindgut317 ± 184 of 4 1.16None
Larval fat body212 ± 64 of 4 0.80Down
Larval trachea277 ± 124 of 4 1.01None
Larval carcass260 ± 124 of 4 0.95None
S2 cells (growing)334 ± 54 of 4 1.22Up
Whole fly273 ± 184 of 4

Looking for FBgn0261995. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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