Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262010 through 18771 annotations produced 1 hits



():

Annotation Number : CG6784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039074
Gbrowse : chr3R:19198898-19199766 (+) // 100.0 //
Probeset : 1624212_at
Accessions : protein= NP_651142; /// NP_732863;, nucleotide= NM_142885; /// NM_170073;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0039074.
VDRC has 3 RNAi stocks for FBgn0039074 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 01 of 4 0.10Down
Head2 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.19Down
Crop3 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut4 ± 01 of 4 0.20Down
Heart0 ± 00 of 4 0.04Down
Fat body5 ± 22 of 4 0.24Down
Ovary1 ± 00 of 4 0.10Down
Testis221 ± 304 of 410.00Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.24Down
Mated spermatheca6 ± 22 of 4 0.27Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland4 ± 00 of 4 0.19Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule4 ± 01 of 4 0.20Down
Larval hindgut3 ± 11 of 4 0.14Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea4 ± 30 of 4 0.20Down
Larval carcass1 ± 00 of 4 0.07Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly22 ± 34 of 4

Looking for FBgn0262010. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime