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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262018 through 18771 annotations produced 1 hits



():

Annotation Number : HDC02994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032655
Gbrowse : chr2L:17815565-17815717 (-) // 97.44 //
Probeset : 1632937_at
Accessions : protein= NP_001036368; /// NP_609855;, nucleotide= NM_001042903; /// NM_136011;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0032655.
VDRC has 6 RNAi stocks for FBgn0032655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 04 of 4 2.50Up
Head2 ± 00 of 4 0.70None
Eye1 ± 10 of 4 0.34None
Thoracicoabdominal ganglion6 ± 40 of 4 1.50None
Salivary gland5 ± 10 of 4 1.28None
Crop5 ± 10 of 4 1.20None
Midgut5 ± 11 of 4 1.40None
Tubule3 ± 10 of 4 0.90None
Hindgut3 ± 10 of 4 0.70None
Heart2 ± 10 of 4 0.57None
Fat body8 ± 30 of 4 1.84None
Ovary3 ± 00 of 4 0.80None
Testis4 ± 11 of 4 1.10None
Male accessory glands6 ± 20 of 4 1.40None
Virgin spermatheca2 ± 10 of 4 0.67None
Mated spermatheca3 ± 10 of 4 0.89None
Adult carcass4 ± 20 of 4 0.90None
Larval CNS4 ± 21 of 4 0.97None
Larval Salivary gland4 ± 10 of 4 1.10None
Larval midgut4 ± 10 of 4 1.12None
Larval tubule5 ± 10 of 4 1.20None
Larval hindgut2 ± 00 of 4 0.57None
Larval fat body4 ± 10 of 4 1.10None
Larval trachea2 ± 10 of 4 0.57None
Larval carcass1 ± 00 of 4 0.28None
S2 cells (growing)3 ± 21 of 4 0.85None
Whole fly4 ± 12 of 4

Looking for FBgn0262018. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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