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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262029 through 18771 annotations produced 2 hits



():

Annotation Number : CG10595
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086896
Gbrowse : chr2L:8482483-8488671 (+) // 100.0 //
Probeset : 1627637_at
Accessions : protein= NP_788005; /// NP_995661; /// NP_995662;, nucleotide= NM_175991; /// NM_205939; /// NM_205940;
Pathway : 0016459 // myosin complex // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0086896.
Homophila reports that CG10595 is a close match (6e-18) to human gene MYH8 (NP_002463), a gene associated with Carney complex variant, 608837 (3);Trismus-pseudocamptodactyly syndrome, 158300 (3).
BioGrid reports that CG10595 interacts with CG1028 CG10917 CG31481 .
VDRC has 5 RNAi stocks for FBgn0086896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.30Down
Head7 11 of 4 0.90None
Eye6 12 of 4 0.69None
Thoracicoabdominal ganglion2 00 of 4 0.30Down
Salivary gland15 51 of 4 1.73None
Crop11 12 of 4 1.20None
Midgut5 10 of 4 0.70None
Tubule3 10 of 4 0.40Down
Hindgut7 11 of 4 0.90None
Heart2 00 of 4 0.30Down
Fat body9 42 of 4 1.11None
Ovary1 00 of 4 0.10Down
Testis5 02 of 4 0.60Down
Male accessory glands4 20 of 4 0.50None
Virgin spermatheca7 22 of 4 0.86None
Mated spermatheca7 21 of 4 0.86None
Adult carcass7 31 of 4 0.90None
Larval CNS168 114 of 419.07Up
Larval Salivary gland14 24 of 4 1.64None
Larval midgut17 04 of 4 1.93Up
Larval tubule3 10 of 4 0.40Down
Larval hindgut27 24 of 4 3.16Up
Larval fat body11 11 of 4 1.30None
Larval trachea231 384 of 426.20Up
Larval carcass149 74 of 416.97Up
S2 cells (growing)0 00 of 4 0.11Down
Whole fly8 04 of 4



():

Annotation Number : CG13087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032045
Gbrowse : chr2L:8476290-8477067 (+) // 100.0 //
Probeset : 1633995_at
Accessions : protein= NP_609233;, nucleotide= NM_135389;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032045.
BioGrid reports that CG13087 interacts with CG32176 CG6688 CG31094 .
VDRC has 5 RNAi stocks for FBgn0032045 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head1 00 of 4 0.50None
Eye5 20 of 4 2.68None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland5 00 of 4 2.69Up
Crop3 00 of 4 1.50None
Midgut1 00 of 4 0.60None
Tubule1 00 of 4 0.90None
Hindgut1 00 of 4 0.50None
Heart0 00 of 4 0.45None
Fat body1 00 of 4 0.72None
Ovary1 00 of 4 0.60None
Testis3 00 of 4 1.60None
Male accessory glands1 00 of 4 0.80None
Virgin spermatheca1 00 of 4 0.65None
Mated spermatheca2 00 of 4 1.12None
Adult carcass1 00 of 4 0.90None
Larval CNS2 10 of 4 0.94None
Larval Salivary gland2 00 of 4 1.34None
Larval midgut5 10 of 4 2.41None
Larval tubule1 00 of 4 0.50None
Larval hindgut1 00 of 4 0.67None
Larval fat body1 00 of 4 0.80None
Larval trachea1 10 of 4 0.76None
Larval carcass1 00 of 4 0.58None
S2 cells (growing)1 00 of 4 0.48None
Whole fly2 00 of 4

Looking for FBgn0262029. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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