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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262057 through 18771 annotations produced 1 hits



():

Annotation Number : CG6680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036968
Gbrowse : chr3L:20310327-20313047 (+) // 99.8 //
Probeset : 1631179_s_at
Accessions : protein= NP_649205; /// NP_730512;, nucleotide= NM_140948; /// NM_168844;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0036968.
Homophila reports that CG6680 is a close match (2e-11) to human gene CBP2;PPROM;SERPINH2 (NP_001226), a gene associated with {Preterm premature rupture of the membranes, susceptibility to}, 610504 (3).
BioGrid reports that CG6680 interacts with CG7786 .
VDRC has 3 RNAi stocks for FBgn0036968 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 ± 04 of 4 0.70Down
Head488 ± 94 of 4 4.90Up
Eye473 ± 34 of 4 4.77Up
Thoracicoabdominal ganglion92 ± 14 of 4 0.90None
Salivary gland89 ± 64 of 4 0.89None
Crop1752 ± 124 of 417.60Up
Midgut26 ± 14 of 4 0.30Down
Tubule29 ± 23 of 4 0.30Down
Hindgut679 ± 234 of 4 6.80Up
Heart361 ± 104 of 4 3.63Up
Fat body510 ± 404 of 4 5.13Up
Ovary9 ± 11 of 4 0.10Down
Testis26 ± 34 of 4 0.30Down
Male accessory glands33 ± 34 of 4 0.30Down
Virgin spermatheca621 ± 314 of 4 6.25Up
Mated spermatheca695 ± 194 of 4 6.99Up
Adult carcass415 ± 124 of 4 4.20Up
Larval CNS45 ± 64 of 4 0.45Down
Larval Salivary gland63 ± 84 of 4 0.64Down
Larval midgut34 ± 33 of 4 0.35Down
Larval tubule31 ± 34 of 4 0.30Down
Larval hindgut505 ± 74 of 4 5.09Up
Larval fat body506 ± 504 of 4 5.10Up
Larval trachea1466 ± 984 of 414.74Up
Larval carcass589 ± 204 of 4 5.93Up
S2 cells (growing)671 ± 194 of 4 6.75Up
Whole fly99 ± 34 of 4

Looking for FBgn0262057. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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