FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262081 through 18771 annotations produced 2 hits

():

Annotation Number : CG32852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259217
Gbrowse : chr3R:7467992-7468796 (-) // 100.0 //
Probeset : 1639039_at
Accessions : protein= NP_650097; /// NP_731607; /// NP_731608; /// NP_731609; /// NP_731611; /// NP_788638;, nucleotide= NM_141840; /// NM_169414; /// NM_169415; /// NM_169416; /// NM_169418; /// NM_169418; /// NM_176461;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259217.
BioGrid reports that CG32852 interacts with CG4918 .
VDRC has 5 RNAi stocks for FBgn0259217 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	0.40	None
Head	5 ± 0	0 of 4	0.50	None
Eye	3 ± 1	0 of 4	0.36	None
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.50	None
Salivary gland	7 ± 3	0 of 4	0.73	None
Crop	16 ± 1	4 of 4	1.50	None
Midgut	9 ± 1	2 of 4	0.90	None
Tubule	5 ± 0	0 of 4	0.50	Down
Hindgut	14 ± 2	4 of 4	1.30	None
Heart	4 ± 1	0 of 4	0.42	None
Fat body	8 ± 3	0 of 4	0.76	None
Ovary	8 ± 1	2 of 4	0.80	None
Testis	6 ± 0	0 of 4	0.60	None
Male accessory glands	8 ± 0	0 of 4	0.80	None
Virgin spermatheca	7 ± 1	0 of 4	0.65	None
Mated spermatheca	7 ± 1	0 of 4	0.65	None
Adult carcass	7 ± 2	0 of 4	0.70	None
Larval CNS	5 ± 0	2 of 4	0.53	None
Larval Salivary gland	8 ± 2	2 of 4	0.76	None
Larval midgut	6 ± 2	0 of 4	0.59	None
Larval tubule	4 ± 1	2 of 4	0.50	None
Larval hindgut	6 ± 1	1 of 4	0.57	None
Larval fat body	6 ± 1	0 of 4	0.60	None
Larval trachea	6 ± 1	1 of 4	0.60	None
Larval carcass	5 ± 1	1 of 4	0.55	None
S2 cells (growing)	11 ± 0	4 of 4	1.06	None
Whole fly	10 ± 2	2 of 4

():

Annotation Number : CG17309
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259217
Gbrowse : chr3R:7458999-7476418 (-) // 100.0 //
Probeset : 1624464_s_at
Accessions : protein= NP_650097; /// NP_731607; /// NP_731608; /// NP_731609; /// NP_731611; /// NP_788638;, nucleotide= NM_141840; /// NM_169414; /// NM_169415; /// NM_169416; /// NM_169418; /// NM_169418; /// NM_176461;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259217.
Homophila reports that CG17309 is a close match (8e-11) to human gene AAT3;HNPCC6;LDS1B;LDS2B;MFS2;TGFBR2 (NP_001020018), a gene associated with Colorectal cancer, hereditary nonpolyposis, type 6 (3);Esophageal cancer, 133239 (3);Loeys-Dietz syndrome, type 1B, 610168 (3);Loeys-Dietz syndrome, type 2B, 610380 (3).
VDRC has 5 RNAi stocks for FBgn0259217 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	489 ± 5	4 of 4	2.60	Up
Head	296 ± 14	4 of 4	1.60	Up
Eye	291 ± 7	4 of 4	1.54	Up
Thoracicoabdominal ganglion	385 ± 8	4 of 4	2.00	Up
Salivary gland	551 ± 25	4 of 4	2.92	Up
Crop	724 ± 18	4 of 4	3.80	Up
Midgut	216 ± 3	4 of 4	1.10	Up
Tubule	212 ± 12	4 of 4	1.10	None
Hindgut	561 ± 17	4 of 4	3.00	Up
Heart	242 ± 13	4 of 4	1.28	Up
Fat body	308 ± 48	4 of 4	1.63	Up
Ovary	218 ± 6	4 of 4	1.20	Up
Testis	60 ± 2	4 of 4	0.30	Down
Male accessory glands	310 ± 10	4 of 4	1.60	Up
Virgin spermatheca	286 ± 6	4 of 4	1.52	Up
Mated spermatheca	315 ± 26	4 of 4	1.67	Up
Adult carcass	233 ± 10	4 of 4	1.20	Up
Larval CNS	486 ± 41	4 of 4	2.58	Up
Larval Salivary gland	439 ± 18	4 of 4	2.33	Up
Larval midgut	147 ± 4	4 of 4	0.78	Down
Larval tubule	267 ± 14	4 of 4	1.40	Up
Larval hindgut	319 ± 11	4 of 4	1.69	Up
Larval fat body	157 ± 6	4 of 4	0.80	Down
Larval trachea	366 ± 46	4 of 4	1.94	Up
Larval carcass	328 ± 76	4 of 4	1.74	None
S2 cells (growing)	304 ± 8	4 of 4	1.61	Up
Whole fly	188 ± 6	4 of 4

Looking for FBgn0262081. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720