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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262103 through 18771 annotations produced 2 hits



():

Annotation Number : CG15072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034376
Gbrowse : chr2R:14576120-14589022 (+) // 100.0 //
Probeset : 1630517_at
Accessions : protein= NP_001097369; /// NP_001097370; /// NP_611359;, nucleotide= NM_001103899; /// NM_001103900; /// NM_137515;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0034376.
Homophila reports that CG15072 is a close match (8e-11) to human gene EGFR (NP_005219), a gene associated with Adenocarcinoma of lung, response to tyrosine kinase inhibitor in, 211980 (3);Nonsmall cell lung cancer, response to tyrosine kinase inhibitor in, 211980 (3);{Nonsmall cell lung cancer, susceptibility to}, 211980 (3).
VDRC has 5 RNAi stocks for FBgn0034376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 10 of 4 1.00None
Head2 00 of 4 0.30None
Eye4 10 of 4 0.42None
Thoracicoabdominal ganglion10 20 of 4 1.10None
Salivary gland13 50 of 4 1.42None
Crop9 20 of 4 1.00None
Midgut3 00 of 4 0.30None
Tubule6 10 of 4 0.70Down
Hindgut13 10 of 4 1.40None
Heart3 10 of 4 0.31None
Fat body4 30 of 4 0.48None
Ovary20 13 of 4 2.10Up
Testis9 10 of 4 1.00None
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.18Down
Mated spermatheca1 00 of 4 0.14Down
Adult carcass7 20 of 4 0.70None
Larval CNS3 20 of 4 0.38None
Larval Salivary gland3 10 of 4 0.38None
Larval midgut3 00 of 4 0.33None
Larval tubule8 20 of 4 0.90None
Larval hindgut2 10 of 4 0.28Down
Larval fat body13 20 of 4 1.40None
Larval trachea1 00 of 4 0.15Down
Larval carcass3 00 of 4 0.37None
S2 cells (growing)17 10 of 4 1.80Up
Whole fly9 20 of 4



():

Annotation Number : CG18604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034378
Gbrowse : chr2R:14589463-14593317 (+) // 100.0 //
Probeset : 1639524_at
Accessions : protein= NP_611361;, nucleotide= NM_137517;
Interpro : 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding //
FlyMine data for FBgn0034378.
BDGP gene expression has embryonic in situ data for CG18604: 4 pix of staining in 1 body parts.
BioGrid reports that CG18604 interacts with CG7056 .
VDRC has 5 RNAi stocks for FBgn0034378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain296 104 of 4 2.50Up
Head151 14 of 4 1.30Up
Eye66 44 of 4 0.55Down
Thoracicoabdominal ganglion264 34 of 4 2.20Up
Salivary gland186 54 of 4 1.55Up
Crop191 54 of 4 1.60Up
Midgut77 24 of 4 0.60Down
Tubule235 134 of 4 2.00Up
Hindgut168 114 of 4 1.40Up
Heart106 64 of 4 0.88None
Fat body335 214 of 4 2.78Up
Ovary403 114 of 4 3.30Up
Testis15 14 of 4 0.10Down
Male accessory glands65 64 of 4 0.50Down
Virgin spermatheca664 584 of 4 5.50Up
Mated spermatheca661 384 of 4 5.48Up
Adult carcass114 94 of 4 0.90None
Larval CNS238 314 of 4 1.98Up
Larval Salivary gland148 84 of 4 1.23Up
Larval midgut95 84 of 4 0.79Down
Larval tubule147 64 of 4 1.20Up
Larval hindgut323 54 of 4 2.68Up
Larval fat body318 284 of 4 2.60Up
Larval trachea91 44 of 4 0.76Down
Larval carcass180 304 of 4 1.49None
S2 cells (growing)170 64 of 4 1.41Up
Whole fly120 24 of 4

Looking for FBgn0262103. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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