FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262109 through 18771 annotations produced 3 hits

():

Annotation Number : CT37659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260457
Gbrowse : chr3L:224138-226169 (+) // 100.0 //
Probeset : 1633109_at
Accessions : protein= NP_728503; /// NP_788444; /// NP_788445;, nucleotide= NM_167815; /// NM_176266; /// NM_176267;
FlyMine data for FBgn0260457.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	182 ± 24	4 of 4	5.60	Up
Head	19 ± 6	4 of 4	0.60	None
Eye	67 ± 11	4 of 4	2.05	None
Thoracicoabdominal ganglion	32 ± 12	4 of 4	1.00	None
Salivary gland	44 ± 4	4 of 4	1.34	None
Crop	47 ± 8	4 of 4	1.50	None
Midgut	40 ± 5	4 of 4	1.20	None
Tubule	16 ± 1	3 of 4	0.50	Down
Hindgut	72 ± 6	4 of 4	2.20	Up
Heart	63 ± 13	4 of 4	1.93	None
Fat body	16 ± 5	3 of 4	0.49	Down
Ovary	20 ± 1	4 of 4	0.60	None
Testis	17 ± 0	4 of 4	0.50	None
Male accessory glands	41 ± 4	4 of 4	1.30	None
Virgin spermatheca	12 ± 1	4 of 4	0.38	Down
Mated spermatheca	16 ± 3	4 of 4	0.51	Down
Adult carcass	50 ± 2	4 of 4	1.50	Up
Larval CNS	13 ± 4	4 of 4	0.42	Down
Larval Salivary gland	9 ± 2	1 of 4	0.28	Down
Larval midgut	6 ± 2	0 of 4	0.20	Down
Larval tubule	35 ± 5	4 of 4	1.10	None
Larval hindgut	15 ± 2	4 of 4	0.48	Down
Larval fat body	89 ± 10	4 of 4	2.70	Up
Larval trachea	105 ± 12	4 of 4	3.23	Up
Larval carcass	14 ± 4	1 of 4	0.44	Down
S2 cells (growing)	256 ± 20	4 of 4	7.81	Up
Whole fly	32 ± 5	4 of 4

():

Annotation Number : CT33405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052477
Gbrowse : chr3L:228266-229560 (+) // 100.0 //
Probeset : 1625672_s_at
Accessions : protein= , nucleotide= NR_001916;
FlyMine data for FBgn0052477.
BDGP gene expression has embryonic in situ data for CG32477: 14 pix of staining in 5 body parts.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1187 ± 99	4 of 4	7.10	Up
Head	163 ± 24	4 of 4	1.00	None
Eye	84 ± 4	4 of 4	0.51	Down
Thoracicoabdominal ganglion	573 ± 130	4 of 4	3.40	None
Salivary gland	344 ± 28	4 of 4	2.06	Up
Crop	396 ± 29	4 of 4	2.40	Up
Midgut	253 ± 39	4 of 4	1.50	None
Tubule	66 ± 2	4 of 4	0.40	Down
Hindgut	493 ± 30	4 of 4	3.00	Up
Heart	70 ± 10	4 of 4	0.42	Down
Fat body	205 ± 100	4 of 4	1.23	None
Ovary	103 ± 2	4 of 4	0.60	Down
Testis	53 ± 3	4 of 4	0.30	Down
Male accessory glands	399 ± 40	4 of 4	2.40	Up
Virgin spermatheca	27 ± 5	4 of 4	0.17	Down
Mated spermatheca	27 ± 4	4 of 4	0.16	Down
Adult carcass	479 ± 58	4 of 4	2.90	Up
Larval CNS	351 ± 72	4 of 4	2.11	Up
Larval Salivary gland	219 ± 42	4 of 4	1.31	None
Larval midgut	67 ± 8	4 of 4	0.41	Down
Larval tubule	277 ± 28	4 of 4	1.70	Up
Larval hindgut	120 ± 12	4 of 4	0.72	Down
Larval fat body	741 ± 60	4 of 4	4.40	Up
Larval trachea	120 ± 19	4 of 4	0.72	Down
Larval carcass	136 ± 46	4 of 4	0.82	None
S2 cells (growing)	1262 ± 66	4 of 4	7.58	Up
Whole fly	166 ± 9	4 of 4

():

Annotation Number : CG32477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052477
Gbrowse : chr3L:226657-230972 (+) // 100.0 //
Probeset : 1640472_at
Accessions : protein= , nucleotide= NR_001916;
FlyMine data for FBgn0052477.
BDGP gene expression has embryonic in situ data for CG32477: 14 pix of staining in 5 body parts.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2865 ± 58	4 of 4	4.70	Up
Head	687 ± 37	4 of 4	1.10	None
Eye	1646 ± 31	4 of 4	2.71	Up
Thoracicoabdominal ganglion	2513 ± 92	4 of 4	4.10	Up
Salivary gland	2100 ± 93	4 of 4	3.45	Up
Crop	1453 ± 86	4 of 4	2.40	Up
Midgut	1067 ± 51	4 of 4	1.80	Up
Tubule	2233 ± 109	4 of 4	3.70	Up
Hindgut	1782 ± 52	4 of 4	2.90	Up
Heart	1041 ± 53	4 of 4	1.71	Up
Fat body	1277 ± 33	4 of 4	2.10	Up
Ovary	538 ± 38	4 of 4	0.90	None
Testis	232 ± 8	4 of 4	0.40	Down
Male accessory glands	1768 ± 81	4 of 4	2.90	Up
Virgin spermatheca	1954 ± 144	4 of 4	3.21	Up
Mated spermatheca	1564 ± 70	4 of 4	2.57	Up
Adult carcass	1544 ± 118	4 of 4	2.50	Up
Larval CNS	1531 ± 102	4 of 4	2.52	Up
Larval Salivary gland	1491 ± 47	4 of 4	2.45	Up
Larval midgut	510 ± 110	4 of 4	0.84	None
Larval tubule	989 ± 83	4 of 4	1.60	Up
Larval hindgut	813 ± 47	4 of 4	1.34	Up
Larval fat body	1856 ± 77	4 of 4	3.10	Up
Larval trachea	1683 ± 139	4 of 4	2.77	Up
Larval carcass	898 ± 89	4 of 4	1.48	Up
S2 cells (growing)	1630 ± 37	4 of 4	2.68	Up
Whole fly	608 ± 54	4 of 4

Looking for FBgn0262109. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720