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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262114 through 18771 annotations produced 1 hits



():

Annotation Number : CG11763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250861
Gbrowse : chr2R:6317216-6324088 (+) // 100.0 //
Probeset : 1636960_a_at
Accessions : protein= NP_001033938; /// NP_610585; /// NP_724932;, nucleotide= NM_001038849; /// NM_136741; /// NM_165770;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0250861.
BioGrid reports that CG11763 interacts with CG13084 CG13458 CG14442 CG14534 CG12085 CG12470 CG14786 CG17154 CG4035 .
VDRC has 1 RNAi stocks for FBgn0250861 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain528 ± 34 of 4 2.50Up
Head340 ± 204 of 4 1.60Up
Eye498 ± 284 of 4 2.36Up
Thoracicoabdominal ganglion533 ± 154 of 4 2.50Up
Salivary gland569 ± 344 of 4 2.70Up
Crop496 ± 74 of 4 2.40Up
Midgut366 ± 104 of 4 1.70Up
Tubule551 ± 244 of 4 2.60Up
Hindgut365 ± 84 of 4 1.70Up
Heart405 ± 284 of 4 1.92Up
Fat body529 ± 684 of 4 2.51Up
Ovary248 ± 74 of 4 1.20Up
Testis36 ± 14 of 4 0.20Down
Male accessory glands428 ± 184 of 4 2.00Up
Virgin spermatheca823 ± 364 of 4 3.90Up
Mated spermatheca657 ± 244 of 4 3.11Up
Adult carcass316 ± 104 of 4 1.50Up
Larval CNS529 ± 464 of 4 2.51Up
Larval Salivary gland413 ± 84 of 4 1.96Up
Larval midgut545 ± 764 of 4 2.58Up
Larval tubule869 ± 124 of 4 4.10Up
Larval hindgut478 ± 614 of 4 2.27Up
Larval fat body434 ± 554 of 4 2.10Up
Larval trachea283 ± 274 of 4 1.34Up
Larval carcass480 ± 604 of 4 2.28Up
S2 cells (growing)425 ± 84 of 4 2.01Up
Whole fly211 ± 54 of 4

Looking for FBgn0262114. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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