FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262115 through 18771 annotations produced 1 hits

():

Annotation Number : CG17683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040002
Gbrowse : chr2R:18441-20468 (+) // 100.0 //
Probeset : 1633568_s_at
Accessions : protein= NP_001036427; /// NP_001036428; /// NP_001036429; /// NP_001036430; /// NP_001036431;, nucleotide= NM_001042962; /// NM_001042963; /// NM_001042964; /// NM_001042965; /// NM_001042966;
Interpro : "0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // infer
FlyMine data for FBgn0040002.
VDRC has 2 RNAi stocks for FBgn0040002 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	325 ± 10	4 of 4	1.50	Up
Head	193 ± 2	4 of 4	0.90	Down
Eye	167 ± 3	4 of 4	0.76	Down
Thoracicoabdominal ganglion	243 ± 2	4 of 4	1.10	Up
Salivary gland	261 ± 3	4 of 4	1.19	Up
Crop	261 ± 7	4 of 4	1.20	Up
Midgut	282 ± 4	4 of 4	1.30	Up
Tubule	542 ± 17	4 of 4	2.50	Up
Hindgut	217 ± 3	4 of 4	1.00	None
Heart	280 ± 5	4 of 4	1.27	Up
Fat body	350 ± 11	4 of 4	1.59	Up
Ovary	414 ± 7	4 of 4	1.90	Up
Testis	36 ± 2	4 of 4	0.20	Down
Male accessory glands	139 ± 7	4 of 4	0.60	Down
Virgin spermatheca	233 ± 9	4 of 4	1.06	None
Mated spermatheca	253 ± 5	4 of 4	1.15	Up
Adult carcass	205 ± 13	4 of 4	0.90	None
Larval CNS	299 ± 12	4 of 4	1.36	Up
Larval Salivary gland	161 ± 4	4 of 4	0.74	Down
Larval midgut	190 ± 6	4 of 4	0.87	Down
Larval tubule	580 ± 15	4 of 4	2.60	Up
Larval hindgut	175 ± 3	4 of 4	0.80	Down
Larval fat body	259 ± 11	4 of 4	1.20	Up
Larval trachea	144 ± 9	4 of 4	0.66	Down
Larval carcass	185 ± 4	4 of 4	0.84	Down
S2 cells (growing)	148 ± 3	4 of 4	0.67	Down
Whole fly	220 ± 5	4 of 4

Looking for FBgn0262115. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720