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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262117 through 18771 annotations produced 1 hits



():

Annotation Number : CG17665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039997
Gbrowse : chr2R:123277-130444 (-) // 100.0 //
Probeset : 1623257_a_at
Accessions : protein= NP_001036436; /// NP_001036437;, nucleotide= NM_001042971; /// NM_001042972;
FlyMine data for FBgn0039997.
VDRC has 3 RNAi stocks for FBgn0039997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain350 94 of 4 1.60Up
Head233 84 of 4 1.00None
Eye357 104 of 4 1.59Up
Thoracicoabdominal ganglion325 84 of 4 1.40Up
Salivary gland245 104 of 4 1.09None
Crop196 64 of 4 0.90None
Midgut122 44 of 4 0.50Down
Tubule170 64 of 4 0.80Down
Hindgut170 44 of 4 0.80Down
Heart133 24 of 4 0.60Down
Fat body133 84 of 4 0.59Down
Ovary460 44 of 4 2.00Up
Testis51 34 of 4 0.20Down
Male accessory glands193 34 of 4 0.90None
Virgin spermatheca107 44 of 4 0.48Down
Mated spermatheca102 54 of 4 0.45Down
Adult carcass137 54 of 4 0.60Down
Larval CNS353 164 of 4 1.57Up
Larval Salivary gland172 74 of 4 0.77Down
Larval midgut99 84 of 4 0.44Down
Larval tubule196 54 of 4 0.90None
Larval hindgut151 44 of 4 0.68Down
Larval fat body133 114 of 4 0.60Down
Larval trachea254 94 of 4 1.13None
Larval carcass195 74 of 4 0.87None
S2 cells (growing)254 44 of 4 1.13None
Whole fly224 164 of 4

Looking for FBgn0262117. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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