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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262125 through 18771 annotations produced 1 hits



():

Annotation Number : CG1250
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037357
Gbrowse : chr3R:1474786-1478354 (+) // 100.0 //
Probeset : 1628598_s_at
Accessions : protein= NP_730978; /// NP_730979;, nucleotide= NM_169088; /// NM_169089;
Pathway : 0030127 // COPII vesicle coat // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037357.
BDGP gene expression has embryonic in situ data for sec23: 27 pix of staining in 15 body parts.
Homophila reports that CG1250 is a close match (0) to human gene CLSD;SEC23A (NP_006355), a gene associated with Craniolenticulosutural dysplasia, 607812 (3).
BioGrid reports that CG1250 interacts with CG8121 CG12576 CG14830 CG15136 CG30193 CG3647 CG8851 .
VDRC has 2 RNAi stocks for FBgn0037357 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain383 104 of 4 1.30Up
Head318 214 of 4 1.10None
Eye248 114 of 4 0.86None
Thoracicoabdominal ganglion407 144 of 4 1.40Up
Salivary gland1433 364 of 4 4.97Up
Crop423 44 of 4 1.50Up
Midgut401 134 of 4 1.40Up
Tubule532 334 of 4 1.80Up
Hindgut329 54 of 4 1.10None
Heart284 84 of 4 0.99None
Fat body508 544 of 4 1.76Up
Ovary287 34 of 4 1.00None
Testis192 94 of 4 0.70Down
Male accessory glands1152 294 of 4 4.00Up
Virgin spermatheca384 184 of 4 1.33Up
Mated spermatheca482 314 of 4 1.67Up
Adult carcass381 74 of 4 1.30Up
Larval CNS334 94 of 4 1.16None
Larval Salivary gland2224 1764 of 4 7.71Up
Larval midgut452 164 of 4 1.57Up
Larval tubule444 74 of 4 1.50Up
Larval hindgut503 184 of 4 1.75Up
Larval fat body407 444 of 4 1.40None
Larval trachea359 724 of 4 1.25None
Larval carcass519 254 of 4 1.80Up
S2 cells (growing)810 144 of 4 2.81Up
Whole fly288 164 of 4

Looking for FBgn0262125. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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