FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262126 through 18771 annotations produced 1 hits

():

Annotation Number : CG10882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031408
Gbrowse : chr2L:2231776-2236826 (-) // 100.0 //
Probeset : 1628938_at
Accessions : protein= NP_608664;, nucleotide= NM_134820;
Pathway : 0030127 // COPII vesicle coat // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0031408.
BDGP gene expression has embryonic in situ data for CG10882: 15 pix of staining in 22 body parts.
BioGrid reports that CG10882 interacts with CG6443 CG11138 CG12157 CG13047 CG13067 CG13512 CG1740 CG2962 CG31460 CG4027 CG5798 CG7113 CG8199 CG9184 CG31034 CG31362 CG33103 .
VDRC has 2 RNAi stocks for FBgn0031408 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	126 ± 2	4 of 4	0.90	Down
Head	136 ± 8	4 of 4	1.00	None
Eye	94 ± 3	4 of 4	0.69	Down
Thoracicoabdominal ganglion	102 ± 3	4 of 4	0.70	Down
Salivary gland	911 ± 48	4 of 4	6.62	Up
Crop	232 ± 9	4 of 4	1.70	Up
Midgut	221 ± 4	4 of 4	1.60	Up
Tubule	127 ± 11	4 of 4	0.90	None
Hindgut	157 ± 6	4 of 4	1.10	Up
Heart	176 ± 8	4 of 4	1.28	Up
Fat body	257 ± 14	4 of 4	1.87	Up
Ovary	174 ± 3	4 of 4	1.30	Up
Testis	76 ± 3	4 of 4	0.60	Down
Male accessory glands	612 ± 40	4 of 4	4.40	Up
Virgin spermatheca	217 ± 11	4 of 4	1.58	Up
Mated spermatheca	282 ± 24	4 of 4	2.05	Up
Adult carcass	176 ± 20	4 of 4	1.30	None
Larval CNS	153 ± 11	4 of 4	1.12	None
Larval Salivary gland	1593 ± 113	4 of 4	11.58	Up
Larval midgut	176 ± 7	4 of 4	1.28	Up
Larval tubule	229 ± 7	4 of 4	1.70	Up
Larval hindgut	201 ± 10	4 of 4	1.46	Up
Larval fat body	213 ± 18	4 of 4	1.60	Up
Larval trachea	218 ± 57	4 of 4	1.58	None
Larval carcass	225 ± 13	4 of 4	1.64	Up
S2 cells (growing)	462 ± 9	4 of 4	3.36	Up
Whole fly	137 ± 2	4 of 4

Looking for FBgn0262126. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720