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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262127 through 18771 annotations produced 2 hits



():

Annotation Number : CG12600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053967
Gbrowse : chr3R:10524605-10529231 (-) // 100.0 //
Probeset : 1632884_at
Accessions : protein= NP_001034055;, nucleotide= NM_001038966;
Pathway : DNA-dependent // inferred from direct assay /// 0035330 // regulation of hippo signaling cascade // inferred from mutan
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
FlyMine data for FBgn0053967.
VDRC has 5 RNAi stocks for FBgn0053967 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 22 of 4 0.70None
Head20 14 of 4 1.20None
Eye19 14 of 4 1.20None
Thoracicoabdominal ganglion15 24 of 4 0.90None
Salivary gland34 83 of 4 2.07None
Crop43 14 of 4 2.70Up
Midgut15 30 of 4 0.90None
Tubule4 00 of 4 0.20Down
Hindgut6 10 of 4 0.40Down
Heart10 23 of 4 0.65None
Fat body7 50 of 4 0.45None
Ovary20 14 of 4 1.30None
Testis7 21 of 4 0.50None
Male accessory glands30 63 of 4 1.80None
Virgin spermatheca2 10 of 4 0.12Down
Mated spermatheca2 00 of 4 0.13Down
Adult carcass23 40 of 4 1.40None
Larval CNS9 53 of 4 0.56None
Larval Salivary gland16 14 of 4 1.02None
Larval midgut29 32 of 4 1.75Up
Larval tubule13 13 of 4 0.80None
Larval hindgut14 10 of 4 0.85None
Larval fat body21 34 of 4 1.30None
Larval trachea35 114 of 4 2.16Up
Larval carcass22 23 of 4 1.34None
S2 cells (growing)98 34 of 4 5.96Up
Whole fly16 32 of 4



():

Annotation Number : CG7552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053967
Gbrowse : chr3R:10549028-10549978 (-) // 100.0 //
Probeset : 1624053_at
Accessions : protein= NP_001034055;, nucleotide= NM_001038966;
Pathway : DNA-dependent // inferred from direct assay /// 0035330 // regulation of hippo signaling cascade // inferred from mutan
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
FlyMine data for FBgn0053967.
BioGrid reports that CG7552 interacts with CG3978 CG3938 .
VDRC has 5 RNAi stocks for FBgn0053967 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 52 of 4 2.10Up
Head18 10 of 4 0.90None
Eye54 34 of 4 2.66Up
Thoracicoabdominal ganglion44 50 of 4 2.20Up
Salivary gland55 30 of 4 2.71Up
Crop110 34 of 4 5.40Up
Midgut53 60 of 4 2.60Up
Tubule27 20 of 4 1.30Up
Hindgut51 10 of 4 2.50Up
Heart43 23 of 4 2.12Up
Fat body25 40 of 4 1.24None
Ovary25 00 of 4 1.20None
Testis7 20 of 4 0.40Down
Male accessory glands70 40 of 4 3.50Up
Virgin spermatheca14 20 of 4 0.73None
Mated spermatheca15 20 of 4 0.74None
Adult carcass46 40 of 4 2.30Up
Larval CNS19 20 of 4 0.98None
Larval Salivary gland17 10 of 4 0.87None
Larval midgut25 40 of 4 1.24None
Larval tubule37 41 of 4 1.90Up
Larval hindgut22 20 of 4 1.08None
Larval fat body55 51 of 4 2.70Up
Larval trachea93 144 of 4 4.61Up
Larval carcass40 50 of 4 2.00Up
S2 cells (growing)181 54 of 4 8.94Up
Whole fly20 20 of 4

Looking for FBgn0262127. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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