FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262139 through 18771 annotations produced 2 hits

():

Annotation Number : CG6883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003749
Gbrowse : chr3L:366522-377316 (-) // 100.0 //
Probeset : 1623736_at
Accessions : protein= NP_001036575; /// NP_523872;, nucleotide= NM_001043110; /// NM_079148;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
FlyMine data for FBgn0003749.
BDGP gene expression has embryonic in situ data for trh: 18 pix of staining in 8 body parts.
Homophila reports that CG6883 is a close match (4e-44) to human gene ECYT4;EPAS1;HIF2A;MOP2 (NP_001421), a gene associated with Erythrocytosis, familial, 4, 611783 (3).
BioGrid reports that CG6883 interacts with CG4006 CG11987 CG11987 CG11987 CG11987 CG9397 .
VDRC has 4 RNAi stocks for FBgn0003749 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	93 ± 5	4 of 4	4.20	Up
Head	56 ± 7	4 of 4	2.50	Up
Eye	12 ± 2	3 of 4	0.54	None
Thoracicoabdominal ganglion	131 ± 8	4 of 4	5.80	Up
Salivary gland	50 ± 1	4 of 4	2.25	Up
Crop	11 ± 0	3 of 4	0.50	None
Midgut	10 ± 0	3 of 4	0.50	None
Tubule	12 ± 0	3 of 4	0.60	Down
Hindgut	25 ± 1	4 of 4	1.10	None
Heart	14 ± 0	3 of 4	0.65	None
Fat body	46 ± 8	4 of 4	2.06	Up
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	1 of 4	0.10	Down
Male accessory glands	8 ± 0	0 of 4	0.40	Down
Virgin spermatheca	17 ± 1	4 of 4	0.76	None
Mated spermatheca	21 ± 2	4 of 4	0.97	None
Adult carcass	43 ± 5	4 of 4	1.90	Up
Larval CNS	129 ± 8	4 of 4	5.79	Up
Larval Salivary gland	71 ± 8	4 of 4	3.18	Up
Larval midgut	20 ± 0	4 of 4	0.91	None
Larval tubule	5 ± 2	0 of 4	0.20	Down
Larval hindgut	25 ± 4	4 of 4	1.14	None
Larval fat body	5 ± 0	1 of 4	0.20	Down
Larval trachea	1590 ± 169	4 of 4	70.90	Up
Larval carcass	56 ± 3	4 of 4	2.50	Up
S2 cells (growing)	1 ± 0	0 of 4	0.08	Down
Whole fly	22 ± 4	4 of 4

():

Annotation Number : CT33417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260471
Gbrowse : chr3L:391481-391697 (-) // 100.0 //
Probeset : 1634590_at
Accessions : protein= NP_001033978;, nucleotide= NM_001038889;
FlyMine data for FBgn0260471.
VDRC has 4 RNAi stocks for FBgn0260471 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 3	0 of 4	3.30	None
Head	6 ± 2	0 of 4	1.60	None
Eye	7 ± 1	0 of 4	1.69	None
Thoracicoabdominal ganglion	8 ± 1	0 of 4	2.10	None
Salivary gland	44 ± 12	0 of 4	10.70	Up
Crop	6 ± 2	0 of 4	1.60	None
Midgut	6 ± 1	0 of 4	1.50	None
Tubule	15 ± 2	0 of 4	3.60	Up
Hindgut	7 ± 3	0 of 4	1.70	None
Heart	4 ± 1	0 of 4	1.02	None
Fat body	7 ± 2	0 of 4	1.68	None
Ovary	5 ± 0	0 of 4	1.30	None
Testis	4 ± 2	0 of 4	1.10	None
Male accessory glands	4 ± 0	0 of 4	1.10	None
Virgin spermatheca	3 ± 0	0 of 4	0.77	None
Mated spermatheca	4 ± 0	0 of 4	0.97	None
Adult carcass	6 ± 0	0 of 4	1.50	Up
Larval CNS	6 ± 4	0 of 4	1.60	None
Larval Salivary gland	3 ± 0	0 of 4	0.80	None
Larval midgut	14 ± 3	0 of 4	3.43	None
Larval tubule	5 ± 1	0 of 4	1.40	None
Larval hindgut	4 ± 0	0 of 4	1.00	None
Larval fat body	17 ± 4	0 of 4	4.30	Up
Larval trachea	1 ± 1	0 of 4	0.43	Down
Larval carcass	4 ± 0	0 of 4	1.08	None
S2 cells (growing)	4 ± 0	0 of 4	1.14	None
Whole fly	4 ± 0	0 of 4

Looking for FBgn0262139. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720