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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262160 through 18771 annotations produced 2 hits



():

Annotation Number : CG9932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032469
Gbrowse : chr2L:13022670-13031333 (-) // 100.0 //
Probeset : 1638653_a_at
Accessions : protein= NP_609599;, nucleotide= NM_135755;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032469.
VDRC has 3 RNAi stocks for FBgn0032469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain296 104 of 4 1.40Up
Head401 244 of 4 2.00Up
Eye503 154 of 4 2.45Up
Thoracicoabdominal ganglion199 114 of 4 1.00None
Salivary gland507 1074 of 4 2.47None
Crop806 574 of 4 3.90Up
Midgut60 64 of 4 0.30Down
Tubule352 304 of 4 1.70Up
Hindgut787 184 of 4 3.80Up
Heart661 244 of 4 3.22Up
Fat body810 1304 of 4 3.94Up
Ovary65 44 of 4 0.30Down
Testis63 94 of 4 0.30Down
Male accessory glands355 94 of 4 1.70Up
Virgin spermatheca265 304 of 4 1.29None
Mated spermatheca263 204 of 4 1.28None
Adult carcass430 514 of 4 2.10Up
Larval CNS110 34 of 4 0.54Down
Larval Salivary gland548 554 of 4 2.67Up
Larval midgut27 64 of 4 0.13Down
Larval tubule273 104 of 4 1.30Up
Larval hindgut327 114 of 4 1.59Up
Larval fat body388 284 of 4 1.90Up
Larval trachea739 804 of 4 3.60Up
Larval carcass539 774 of 4 2.63Up
S2 cells (growing)316 344 of 4 1.54Up
Whole fly205 204 of 4



():

Annotation Number : S.C2L001770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032469
Gbrowse : chr2L:13035355-13065175 (-) // 100.0 //
Probeset : 1640518_at
Accessions : protein= NP_609599;, nucleotide= NM_135755;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032469.
VDRC has 3 RNAi stocks for FBgn0032469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 12 of 4 3.00None
Head0 00 of 4 0.30None
Eye3 00 of 4 1.63None
Thoracicoabdominal ganglion4 11 of 4 2.30None
Salivary gland7 40 of 4 3.51None
Crop7 22 of 4 3.40None
Midgut2 00 of 4 1.00None
Tubule5 01 of 4 2.70Up
Hindgut7 12 of 4 3.70Up
Heart3 10 of 4 1.78None
Fat body3 31 of 4 1.80None
Ovary1 00 of 4 0.90None
Testis3 00 of 4 1.50None
Male accessory glands4 20 of 4 2.10None
Virgin spermatheca2 10 of 4 1.04None
Mated spermatheca3 10 of 4 1.56None
Adult carcass4 10 of 4 2.20None
Larval CNS3 30 of 4 1.63None
Larval Salivary gland4 10 of 4 2.04None
Larval midgut1 00 of 4 0.67None
Larval tubule4 01 of 4 2.20Up
Larval hindgut0 00 of 4 0.44None
Larval fat body10 10 of 4 5.00Up
Larval trachea4 10 of 4 2.06None
Larval carcass2 00 of 4 1.47None
S2 cells (growing)1 00 of 4 0.84None
Whole fly2 00 of 4

Looking for FBgn0262160. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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