FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262160 through 18771 annotations produced 2 hits

():

Annotation Number : CG9932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032469
Gbrowse : chr2L:13022670-13031333 (-) // 100.0 //
Probeset : 1638653_a_at
Accessions : protein= NP_609599;, nucleotide= NM_135755;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032469.
VDRC has 3 RNAi stocks for FBgn0032469 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	296 ± 10	4 of 4	1.40	Up
Head	401 ± 24	4 of 4	2.00	Up
Eye	503 ± 15	4 of 4	2.45	Up
Thoracicoabdominal ganglion	199 ± 11	4 of 4	1.00	None
Salivary gland	507 ± 107	4 of 4	2.47	None
Crop	806 ± 57	4 of 4	3.90	Up
Midgut	60 ± 6	4 of 4	0.30	Down
Tubule	352 ± 30	4 of 4	1.70	Up
Hindgut	787 ± 18	4 of 4	3.80	Up
Heart	661 ± 24	4 of 4	3.22	Up
Fat body	810 ± 130	4 of 4	3.94	Up
Ovary	65 ± 4	4 of 4	0.30	Down
Testis	63 ± 9	4 of 4	0.30	Down
Male accessory glands	355 ± 9	4 of 4	1.70	Up
Virgin spermatheca	265 ± 30	4 of 4	1.29	None
Mated spermatheca	263 ± 20	4 of 4	1.28	None
Adult carcass	430 ± 51	4 of 4	2.10	Up
Larval CNS	110 ± 3	4 of 4	0.54	Down
Larval Salivary gland	548 ± 55	4 of 4	2.67	Up
Larval midgut	27 ± 6	4 of 4	0.13	Down
Larval tubule	273 ± 10	4 of 4	1.30	Up
Larval hindgut	327 ± 11	4 of 4	1.59	Up
Larval fat body	388 ± 28	4 of 4	1.90	Up
Larval trachea	739 ± 80	4 of 4	3.60	Up
Larval carcass	539 ± 77	4 of 4	2.63	Up
S2 cells (growing)	316 ± 34	4 of 4	1.54	Up
Whole fly	205 ± 20	4 of 4

():

Annotation Number : S.C2L001770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032469
Gbrowse : chr2L:13035355-13065175 (-) // 100.0 //
Probeset : 1640518_at
Accessions : protein= NP_609599;, nucleotide= NM_135755;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032469.
VDRC has 3 RNAi stocks for FBgn0032469 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	2 of 4	3.00	None
Head	0 ± 0	0 of 4	0.30	None
Eye	3 ± 0	0 of 4	1.63	None
Thoracicoabdominal ganglion	4 ± 1	1 of 4	2.30	None
Salivary gland	7 ± 4	0 of 4	3.51	None
Crop	7 ± 2	2 of 4	3.40	None
Midgut	2 ± 0	0 of 4	1.00	None
Tubule	5 ± 0	1 of 4	2.70	Up
Hindgut	7 ± 1	2 of 4	3.70	Up
Heart	3 ± 1	0 of 4	1.78	None
Fat body	3 ± 3	1 of 4	1.80	None
Ovary	1 ± 0	0 of 4	0.90	None
Testis	3 ± 0	0 of 4	1.50	None
Male accessory glands	4 ± 2	0 of 4	2.10	None
Virgin spermatheca	2 ± 1	0 of 4	1.04	None
Mated spermatheca	3 ± 1	0 of 4	1.56	None
Adult carcass	4 ± 1	0 of 4	2.20	None
Larval CNS	3 ± 3	0 of 4	1.63	None
Larval Salivary gland	4 ± 1	0 of 4	2.04	None
Larval midgut	1 ± 0	0 of 4	0.67	None
Larval tubule	4 ± 0	1 of 4	2.20	Up
Larval hindgut	0 ± 0	0 of 4	0.44	None
Larval fat body	10 ± 1	0 of 4	5.00	Up
Larval trachea	4 ± 1	0 of 4	2.06	None
Larval carcass	2 ± 0	0 of 4	1.47	None
S2 cells (growing)	1 ± 0	0 of 4	0.84	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0262160. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720