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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262167 through 18771 annotations produced 1 hits



():

Annotation Number : CG6631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039206
Gbrowse : chr3R:20357701-20362124 (+) // 100.0 //
Probeset : 1637397_a_at
Accessions : protein= NP_651268; /// NP_733008;, nucleotide= NM_143011; /// NM_170148;
FlyMine data for FBgn0039206.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 44 of 4 0.70None
Head37 ± 24 of 4 0.50Down
Eye44 ± 34 of 4 0.60Down
Thoracicoabdominal ganglion68 ± 44 of 4 0.90None
Salivary gland36 ± 42 of 4 0.50Down
Crop65 ± 04 of 4 0.90None
Midgut26 ± 24 of 4 0.40Down
Tubule22 ± 13 of 4 0.30Down
Hindgut39 ± 24 of 4 0.50Down
Heart18 ± 24 of 4 0.26Down
Fat body17 ± 71 of 4 0.24Down
Ovary155 ± 24 of 4 2.10Up
Testis234 ± 74 of 4 3.20Up
Male accessory glands170 ± 74 of 4 2.30Up
Virgin spermatheca24 ± 34 of 4 0.33Down
Mated spermatheca26 ± 14 of 4 0.36Down
Adult carcass38 ± 24 of 4 0.50Down
Larval CNS123 ± 64 of 4 1.68Up
Larval Salivary gland17 ± 40 of 4 0.23Down
Larval midgut19 ± 24 of 4 0.27Down
Larval tubule32 ± 14 of 4 0.40Down
Larval hindgut25 ± 34 of 4 0.35Down
Larval fat body64 ± 273 of 4 0.90None
Larval trachea73 ± 134 of 4 1.00None
Larval carcass48 ± 54 of 4 0.65Down
S2 cells (growing)104 ± 34 of 4 1.42Up
Whole fly73 ± 54 of 4

Looking for FBgn0262167. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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