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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262169 through 18771 annotations produced 1 hits



():

Annotation Number : CG2264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033478
Gbrowse : chr2R:5940047-5951218 (+) // 100.0 //
Probeset : 1641530_s_at
Accessions : protein= NP_001097254; /// NP_610548; /// NP_724871; /// NP_724872; /// NP_724873;, nucleotide= NM_001103784; /// NM_136704; /// NM_165730; /// NM_165731; /// NM_165732;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0033478.
BioGrid reports that CG2264 interacts with CG9522 CG9506 .
VDRC has 1 RNAi stocks for FBgn0033478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 74 of 4 0.50Down
Head183 64 of 4 1.00None
Eye92 84 of 4 0.52Down
Thoracicoabdominal ganglion122 74 of 4 0.70Down
Salivary gland63 74 of 4 0.36Down
Crop69 104 of 4 0.40Down
Midgut73 14 of 4 0.40Down
Tubule140 204 of 4 0.80None
Hindgut177 24 of 4 1.00None
Heart137 114 of 4 0.77Down
Fat body294 254 of 4 1.65Up
Ovary270 54 of 4 1.50Up
Testis34 24 of 4 0.20Down
Male accessory glands109 64 of 4 0.60Down
Virgin spermatheca263 174 of 4 1.47Up
Mated spermatheca272 154 of 4 1.52Up
Adult carcass238 74 of 4 1.30Up
Larval CNS150 64 of 4 0.84None
Larval Salivary gland65 34 of 4 0.37Down
Larval midgut82 134 of 4 0.46Down
Larval tubule63 44 of 4 0.40Down
Larval hindgut220 134 of 4 1.23None
Larval fat body45 44 of 4 0.30Down
Larval trachea679 1074 of 4 3.80Up
Larval carcass191 94 of 4 1.07None
S2 cells (growing)32 34 of 4 0.18Down
Whole fly178 114 of 4

Looking for FBgn0262169. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime