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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0262352 through 18771 annotations produced 1 hits


():

Annotation Number : S.C2L001774
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:13115409-13120882 (+) // 96.33 //
Probeset : 1631842_at
Accessions : protein= , nucleotide=
Interpro : 0005488 // binding // inferred from electronic annotation


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head2 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 40 of 4 0.30Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.20Down
Heart2 ± 00 of 4 0.08Down
Fat body2 ± 20 of 4 0.07Down
Ovary6 ± 20 of 4 0.20Down
Testis84 ± 94 of 4 2.60Up
Male accessory glands2531 ± 1134 of 478.90Up
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca2 ± 10 of 4 0.09Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS1 ± 20 of 4 0.06Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut2 ± 10 of 4 0.08Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body23 ± 62 of 4 0.70None
Larval trachea7 ± 72 of 4 0.23Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly32 ± 24 of 4

Looking for FBgn0262352. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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