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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262363 through 18771 annotations produced 2 hits



Seminal fluid protein 93F (Sfp93F):

Annotation Number : HDC14862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261060
Gbrowse : chr3R:17560169-17562546 (-) // 100.0 //
Probeset : 1638524_s_at
Accessions : protein= NP_001163677;, nucleotide= NM_001170206;
FlyMine data for FBgn0261060.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye5 ± 20 of 4 0.07Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.10Down
Salivary gland8 ± 60 of 4 0.12Down
Crop4 ± 10 of 4 0.10Down
Midgut16 ± 32 of 4 0.20Down
Tubule5 ± 10 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.05Down
Fat body8 ± 30 of 4 0.12Down
Ovary3 ± 10 of 4 0.00Down
Testis11 ± 32 of 4 0.20Down
Male accessory glands1801 ± 1534 of 425.10Up
Virgin spermatheca7 ± 10 of 4 0.10Down
Mated spermatheca6 ± 20 of 4 0.09Down
Adult carcass7 ± 10 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.05Down
Larval Salivary gland8 ± 20 of 4 0.12Down
Larval midgut6 ± 00 of 4 0.09Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.06Down
Larval fat body18 ± 30 of 4 0.30Down
Larval trachea6 ± 50 of 4 0.10Down
Larval carcass9 ± 20 of 4 0.13Down
S2 cells (growing)4 ± 10 of 4 0.07Down
Whole fly71 ± 104 of 4



Seminal fluid protein 93F (Sfp93F):

Annotation Number : HDC14862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261060
Gbrowse : chr3R:17560169-17562546 (-) // 100.0 //
Probeset : 1629580_at
Accessions : protein= NP_001163677;, nucleotide= NM_001170206;
FlyMine data for FBgn0261060.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 5.60Up
Head2 ± 10 of 4 2.50None
Eye1 ± 00 of 4 1.21None
Thoracicoabdominal ganglion6 ± 10 of 4 6.70Up
Salivary gland9 ± 60 of 4 9.66None
Crop1 ± 00 of 4 1.60Up
Midgut1 ± 00 of 4 1.40Up
Tubule2 ± 00 of 4 2.80Up
Hindgut1 ± 00 of 4 1.90None
Heart2 ± 10 of 4 2.26None
Fat body4 ± 20 of 4 4.92None
Ovary1 ± 00 of 4 1.10None
Testis0 ± 00 of 4 0.90None
Male accessory glands7 ± 00 of 4 7.80Up
Virgin spermatheca5 ± 20 of 4 5.76None
Mated spermatheca3 ± 10 of 4 3.58None
Adult carcass4 ± 20 of 4 4.20None
Larval CNS2 ± 10 of 4 2.29None
Larval Salivary gland1 ± 00 of 4 1.92None
Larval midgut0 ± 00 of 4 0.79None
Larval tubule2 ± 10 of 4 2.20None
Larval hindgut0 ± 00 of 4 0.71None
Larval fat body3 ± 10 of 4 3.60None
Larval trachea0 ± 00 of 4 0.53Down
Larval carcass1 ± 00 of 4 1.84None
S2 cells (growing)0 ± 00 of 4 0.84None
Whole fly1 ± 00 of 4

Looking for FBgn0262363. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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