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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262364 through 18771 annotations produced 1 hits



():

Annotation Number : HDC13081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:7576096-7576622 (+) // 100.0 //
Probeset : 1633943_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head3 ± 11 of 4 0.10Down
Eye5 ± 10 of 4 0.23Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland10 ± 30 of 4 0.45Down
Crop3 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20Down
Heart6 ± 11 of 4 0.26Down
Fat body6 ± 10 of 4 0.27Down
Ovary4 ± 01 of 4 0.20Down
Testis320 ± 44 of 414.20Up
Male accessory glands7 ± 20 of 4 0.30Down
Virgin spermatheca5 ± 10 of 4 0.25Down
Mated spermatheca6 ± 00 of 4 0.27Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS4 ± 10 of 4 0.21Down
Larval Salivary gland5 ± 10 of 4 0.22Down
Larval midgut2 ± 10 of 4 0.10Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 01 of 4 0.14Down
Larval fat body40 ± 232 of 4 1.80None
Larval trachea4 ± 21 of 4 0.20Down
Larval carcass3 ± 10 of 4 0.14Down
S2 cells (growing)3 ± 00 of 4 0.16Down
Whole fly22 ± 24 of 4

Looking for FBgn0262364. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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