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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262467 through 18771 annotations produced 1 hits



():

Annotation Number : CG8885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031656
Gbrowse : chr2L:4967821-4968936 (-) // 100.0 //
Probeset : 1636845_at
Accessions : protein= NP_608884;, nucleotide= NM_135040;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation
Interpro : 0005507 // copper ion binding // inferred from electronic annotation
FlyMine data for FBgn0031656.
Homophila reports that CG8885 is a close match (1e-57) to human gene SCO2 (NP_005129), a gene associated with Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency, 604377 (3).
VDRC has 2 RNAi stocks for FBgn0031656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain318 74 of 4 1.20Up
Head254 114 of 4 0.90None
Eye314 64 of 4 1.17Up
Thoracicoabdominal ganglion381 134 of 4 1.40Up
Salivary gland188 84 of 4 0.70Down
Crop264 64 of 4 1.00None
Midgut256 124 of 4 1.00None
Tubule366 54 of 4 1.40Up
Hindgut309 84 of 4 1.10Up
Heart264 64 of 4 0.98None
Fat body216 224 of 4 0.80Down
Ovary501 114 of 4 1.90Up
Testis205 54 of 4 0.80Down
Male accessory glands144 74 of 4 0.50Down
Virgin spermatheca249 44 of 4 0.92Down
Mated spermatheca265 194 of 4 0.98None
Adult carcass212 74 of 4 0.80Down
Larval CNS313 114 of 4 1.16Up
Larval Salivary gland289 194 of 4 1.07None
Larval midgut214 144 of 4 0.79Down
Larval tubule229 74 of 4 0.80Down
Larval hindgut347 184 of 4 1.29Up
Larval fat body143 54 of 4 0.50Down
Larval trachea340 454 of 4 1.26None
Larval carcass281 244 of 4 1.04None
S2 cells (growing)218 64 of 4 0.81Down
Whole fly270 24 of 4

Looking for FBgn0262467. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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