FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262468 through 18771 annotations produced 1 hits

():

Annotation Number : CG5269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260992
Gbrowse : chr3R:15043465-15052373 (-) // 100.0 //
Probeset : 1626314_at
Accessions : protein= NP_524404;, nucleotide= NM_079680;
Pathway : actomyosin contractile ring assembly // inferred from mutant phenotype /// 0000916 // contractile ring contraction invo
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct a
FlyMine data for FBgn0260992.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	252 ± 11	4 of 4	0.90	None
Head	259 ± 18	4 of 4	0.90	None
Eye	453 ± 13	4 of 4	1.63	Up
Thoracicoabdominal ganglion	148 ± 11	4 of 4	0.50	Down
Salivary gland	368 ± 24	4 of 4	1.32	Up
Crop	366 ± 1	4 of 4	1.30	Up
Midgut	685 ± 18	4 of 4	2.50	Up
Tubule	443 ± 44	4 of 4	1.60	Up
Hindgut	540 ± 4	4 of 4	1.90	Up
Heart	722 ± 33	4 of 4	2.60	Up
Fat body	470 ± 48	4 of 4	1.69	Up
Ovary	334 ± 7	4 of 4	1.20	Up
Testis	180 ± 2	4 of 4	0.60	Down
Male accessory glands	312 ± 23	4 of 4	1.10	None
Virgin spermatheca	473 ± 17	4 of 4	1.70	Up
Mated spermatheca	429 ± 21	4 of 4	1.55	Up
Adult carcass	306 ± 14	4 of 4	1.10	None
Larval CNS	176 ± 6	4 of 4	0.63	Down
Larval Salivary gland	1616 ± 184	4 of 4	5.81	Up
Larval midgut	415 ± 27	4 of 4	1.49	Up
Larval tubule	527 ± 18	4 of 4	1.90	Up
Larval hindgut	524 ± 12	4 of 4	1.88	Up
Larval fat body	323 ± 26	4 of 4	1.20	None
Larval trachea	618 ± 63	4 of 4	2.22	Up
Larval carcass	262 ± 11	4 of 4	0.94	None
S2 cells (growing)	449 ± 12	4 of 4	1.62	Up
Whole fly	278 ± 11	4 of 4

Looking for FBgn0262468. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720