FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262473 through 18771 annotations produced 2 hits

():

Annotation Number : RE46574
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003717
Gbrowse : chr3R:22624764-22653391 (+) // 100.0 //
Probeset : 1624769_s_at
Accessions : protein= NP_524518; /// NP_733166;, nucleotide= NM_079794; /// NM_170287;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor
FlyMine data for FBgn0003717.
VDRC has 1 RNAi stocks for FBgn0003717 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 3	4 of 4	6.80	Up
Head	6 ± 2	2 of 4	1.60	None
Eye	16 ± 2	4 of 4	3.84	Up
Thoracicoabdominal ganglion	22 ± 2	4 of 4	5.30	Up
Salivary gland	25 ± 1	2 of 4	5.88	Up
Crop	20 ± 1	4 of 4	4.60	Up
Midgut	3 ± 1	0 of 4	0.70	None
Tubule	7 ± 0	1 of 4	1.80	Up
Hindgut	15 ± 1	4 of 4	3.70	Up
Heart	8 ± 1	3 of 4	2.05	None
Fat body	23 ± 5	4 of 4	5.36	Up
Ovary	2 ± 0	0 of 4	0.60	None
Testis	5 ± 1	1 of 4	1.20	None
Male accessory glands	13 ± 1	2 of 4	3.00	Up
Virgin spermatheca	10 ± 1	4 of 4	2.45	Up
Mated spermatheca	11 ± 2	4 of 4	2.62	Up
Adult carcass	13 ± 1	1 of 4	3.20	Up
Larval CNS	19 ± 4	4 of 4	4.54	Up
Larval Salivary gland	11 ± 2	1 of 4	2.60	None
Larval midgut	7 ± 2	0 of 4	1.76	None
Larval tubule	11 ± 1	4 of 4	2.60	Up
Larval hindgut	13 ± 2	4 of 4	3.07	Up
Larval fat body	18 ± 1	4 of 4	4.20	Up
Larval trachea	16 ± 5	4 of 4	3.75	Up
Larval carcass	12 ± 1	0 of 4	2.90	Up
S2 cells (growing)	10 ± 1	2 of 4	2.37	Up
Whole fly	4 ± 0	0 of 4

():

Annotation Number : CG5490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003717
Gbrowse : chr3R:22624764-22668125 (+) // 100.0 //
Probeset : 1639321_s_at
Accessions : protein= NP_524518; /// NP_733166;, nucleotide= NM_079794; /// NM_170287;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor
FlyMine data for FBgn0003717.
Homophila reports that CG5490 is a close match (5e-11) to human gene IL1R8;IL1RAPL1;MRX21;MRX34 (NP_055086), a gene associated with Mental retardation, X-linked, 21/34, 300143 (3).
BioGrid reports that CG5490 interacts with CG5848 CG5848 CG4920 CG5803 CG2078 CG2078 CG11992 CG4257 CG9885 CG12058 .
VDRC has 1 RNAi stocks for FBgn0003717 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	504 ± 8	4 of 4	1.30	Up
Head	281 ± 11	4 of 4	0.70	Down
Eye	275 ± 16	4 of 4	0.69	Down
Thoracicoabdominal ganglion	354 ± 10	4 of 4	0.90	None
Salivary gland	197 ± 11	4 of 4	0.49	Down
Crop	347 ± 9	4 of 4	0.90	None
Midgut	12 ± 1	4 of 4	0.00	Down
Tubule	20 ± 6	2 of 4	0.10	Down
Hindgut	244 ± 6	4 of 4	0.60	Down
Heart	231 ± 11	4 of 4	0.58	Down
Fat body	341 ± 26	4 of 4	0.85	None
Ovary	1232 ± 12	4 of 4	3.10	Up
Testis	23 ± 1	4 of 4	0.10	Down
Male accessory glands	61 ± 5	4 of 4	0.20	Down
Virgin spermatheca	371 ± 23	4 of 4	0.93	None
Mated spermatheca	331 ± 13	4 of 4	0.83	None
Adult carcass	162 ± 7	4 of 4	0.40	Down
Larval CNS	680 ± 42	4 of 4	1.70	Up
Larval Salivary gland	89 ± 10	4 of 4	0.22	Down
Larval midgut	18 ± 1	4 of 4	0.05	Down
Larval tubule	159 ± 10	4 of 4	0.40	Down
Larval hindgut	317 ± 15	4 of 4	0.79	Down
Larval fat body	372 ± 19	4 of 4	0.90	None
Larval trachea	351 ± 36	4 of 4	0.88	None
Larval carcass	293 ± 13	4 of 4	0.73	Down
S2 cells (growing)	167 ± 11	4 of 4	0.42	Down
Whole fly	400 ± 26	4 of 4

Looking for FBgn0262473. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720