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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262475 through 18771 annotations produced 2 hits



():

Annotation Number : CG31761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043904
Gbrowse : chr2L:12344380-12397534 (+) // 100.0 //
Probeset : 1632260_s_at
Accessions : protein= NP_001036356; /// NP_609559; /// NP_723742; /// NP_788039;, nucleotide= NM_001042891; /// NM_135715; /// NM_165007; /// NM_176025;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0043904.
VDRC has 3 RNAi stocks for FBgn0043904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 24 of 4 0.40Down
Head57 ± 24 of 4 0.70None
Eye32 ± 64 of 4 0.39Down
Thoracicoabdominal ganglion15 ± 04 of 4 0.20Down
Salivary gland355 ± 394 of 4 4.24Up
Crop112 ± 54 of 4 1.30Up
Midgut193 ± 144 of 4 2.30Up
Tubule461 ± 434 of 4 5.50Up
Hindgut405 ± 184 of 4 4.80Up
Heart323 ± 274 of 4 3.86Up
Fat body296 ± 454 of 4 3.54Up
Ovary29 ± 14 of 4 0.30Down
Testis39 ± 14 of 4 0.50Down
Male accessory glands434 ± 424 of 4 5.20Up
Virgin spermatheca99 ± 144 of 4 1.19None
Mated spermatheca108 ± 134 of 4 1.29None
Adult carcass145 ± 184 of 4 1.70Up
Larval CNS15 ± 34 of 4 0.19Down
Larval Salivary gland139 ± 214 of 4 1.67None
Larval midgut199 ± 124 of 4 2.39Up
Larval tubule463 ± 304 of 4 5.50Up
Larval hindgut518 ± 404 of 4 6.20Up
Larval fat body19 ± 23 of 4 0.20Down
Larval trachea66 ± 54 of 4 0.79None
Larval carcass56 ± 54 of 4 0.68None
S2 cells (growing)3 ± 12 of 4 0.05Down
Whole fly83 ± 94 of 4



():

Annotation Number : CG31763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051763
Gbrowse : chr2L:12373714-12374119 (+) // 100.0 //
Probeset : 1633288_at
Accessions : protein= NP_723744;, nucleotide= NM_165009;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0051763.
VDRC has 3 RNAi stocks for FBgn0051763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.40None
Head5 ± 12 of 4 0.60None
Eye4 ± 00 of 4 0.45None
Thoracicoabdominal ganglion1 ± 00 of 4 0.10None
Salivary gland38 ± 94 of 4 4.23Up
Crop17 ± 04 of 4 1.90Up
Midgut7 ± 10 of 4 0.80None
Tubule3 ± 00 of 4 0.30Down
Hindgut44 ± 34 of 4 4.90Up
Heart24 ± 44 of 4 2.68Up
Fat body16 ± 24 of 4 1.81None
Ovary2 ± 00 of 4 0.30None
Testis2 ± 00 of 4 0.20None
Male accessory glands64 ± 34 of 4 7.20Up
Virgin spermatheca3 ± 11 of 4 0.33None
Mated spermatheca4 ± 11 of 4 0.52None
Adult carcass19 ± 14 of 4 2.20Up
Larval CNS3 ± 22 of 4 0.34None
Larval Salivary gland16 ± 24 of 4 1.77None
Larval midgut3 ± 10 of 4 0.39None
Larval tubule16 ± 04 of 4 1.80None
Larval hindgut27 ± 44 of 4 3.05Up
Larval fat body2 ± 10 of 4 0.30None
Larval trachea8 ± 22 of 4 0.95None
Larval carcass0 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.15Down
Whole fly9 ± 21 of 4

Looking for FBgn0262475. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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