Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262477 through 18771 annotations produced 2 hits



():

Annotation Number : CG32937
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052937
Gbrowse : chr3R:5552291-5552738 (-) // 100.0 //
Probeset : 1641095_at
Accessions : protein= NP_788619;, nucleotide= NM_176442;
FlyMine data for FBgn0052937.
VDRC has 3 RNAi stocks for FBgn0052937 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain226 94 of 436.70Up
Head11 14 of 4 1.90Up
Eye14 43 of 4 2.38None
Thoracicoabdominal ganglion137 134 of 422.30Up
Salivary gland5 20 of 4 0.81None
Crop1 00 of 4 0.20Down
Midgut1 00 of 4 0.20Down
Tubule3 00 of 4 0.50Down
Hindgut1 00 of 4 0.20Down
Heart0 00 of 4 0.08Down
Fat body3 30 of 4 0.50None
Ovary1 10 of 4 0.30Down
Testis1 00 of 4 0.20Down
Male accessory glands1 00 of 4 0.30Down
Virgin spermatheca3 10 of 4 0.55None
Mated spermatheca1 00 of 4 0.30Down
Adult carcass5 20 of 4 1.00None
Larval CNS56 164 of 4 9.15Up
Larval Salivary gland3 00 of 4 0.57None
Larval midgut2 00 of 4 0.34None
Larval tubule1 00 of 4 0.20Down
Larval hindgut0 00 of 4 0.12Down
Larval fat body2 10 of 4 0.40None
Larval trachea2 20 of 4 0.43None
Larval carcass2 00 of 4 0.32None
S2 cells (growing)0 00 of 4 0.07Down
Whole fly6 10 of 4



():

Annotation Number : CG16899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037735
Gbrowse : chr3R:5553129-5555155 (-) // 100.0 //
Probeset : 1624968_at
Accessions : protein= NP_001097726;, nucleotide= NM_001104256;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
FlyMine data for FBgn0037735.
Homophila reports that CG16899 is a close match (7e-11) to human gene FKHL14;FOXC2;MFH1 (NP_005242), a gene associated with Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus, 153400 (3);Lymphedema-distichiasis syndrome, 153400 (3).
BioGrid reports that CG16899 interacts with CG16899 CG18132 CG2104 CG7264 CG9632 CG17625 CG31534 CG3225 CG5333 CG5466 CG7352 .
VDRC has 3 RNAi stocks for FBgn0037735 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 84 of 4 9.00Up
Head18 14 of 4 1.90Up
Eye8 12 of 4 0.89None
Thoracicoabdominal ganglion55 74 of 4 5.70Up
Salivary gland12 20 of 4 1.28None
Crop10 02 of 4 1.10None
Midgut9 10 of 4 0.90None
Tubule6 00 of 4 0.70Down
Hindgut9 21 of 4 1.00None
Heart5 11 of 4 0.62Down
Fat body8 22 of 4 0.88None
Ovary3 00 of 4 0.30Down
Testis4 10 of 4 0.50Down
Male accessory glands22 13 of 4 2.30Up
Virgin spermatheca9 10 of 4 0.94None
Mated spermatheca15 23 of 4 1.58None
Adult carcass20 52 of 4 2.10None
Larval CNS25 64 of 4 2.63Up
Larval Salivary gland15 14 of 4 1.63Up
Larval midgut8 11 of 4 0.84None
Larval tubule8 03 of 4 0.80None
Larval hindgut5 10 of 4 0.60None
Larval fat body9 11 of 4 1.00None
Larval trachea7 31 of 4 0.82None
Larval carcass12 13 of 4 1.24None
S2 cells (growing)9 12 of 4 0.98None
Whole fly9 02 of 4

Looking for FBgn0262477. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime