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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262483 through 18771 annotations produced 2 hits



():

Annotation Number : CG14867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038333
Gbrowse : chr3R:11206906-11207621 (+) // 100.0 //
Probeset : 1626872_at
Accessions : protein= NP_650461;, nucleotide= NM_142204;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038333.
BioGrid reports that CG14867 interacts with CG6972 CG8668 .
VDRC has 8 RNAi stocks for FBgn0038333 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.90None
Head0 ± 00 of 4 1.40None
Eye1 ± 00 of 4 1.69Up
Thoracicoabdominal ganglion2 ± 00 of 4 3.60None
Salivary gland6 ± 20 of 4 9.35None
Crop4 ± 20 of 4 7.00None
Midgut1 ± 00 of 4 2.40Up
Tubule2 ± 00 of 4 3.50Up
Hindgut0 ± 00 of 4 1.40None
Heart1 ± 00 of 4 2.31None
Fat body1 ± 00 of 4 1.81None
Ovary1 ± 00 of 4 2.80None
Testis2 ± 00 of 4 3.90None
Male accessory glands1 ± 00 of 4 1.50None
Virgin spermatheca0 ± 00 of 4 1.38None
Mated spermatheca0 ± 00 of 4 1.12None
Adult carcass1 ± 00 of 4 2.30None
Larval CNS0 ± 00 of 4 1.00None
Larval Salivary gland1 ± 00 of 4 2.73Up
Larval midgut2 ± 00 of 4 3.54None
Larval tubule2 ± 10 of 4 3.10None
Larval hindgut2 ± 10 of 4 4.31None
Larval fat body0 ± 00 of 4 1.20None
Larval trachea1 ± 00 of 4 1.62None
Larval carcass1 ± 00 of 4 2.15Up
S2 cells (growing)0 ± 00 of 4 0.77None
Whole fly0 ± 00 of 4



():

Annotation Number : CG31302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051302
Gbrowse : chr3R:11208719-11225733 (+) // 100.0 //
Probeset : 1641526_a_at
Accessions : protein= NP_001163620; /// NP_732028; /// NP_732029; /// NP_732030;, nucleotide= NM_001170149; /// NM_169652; /// NM_169653; /// NM_169654;
FlyMine data for FBgn0051302.
BDGP gene expression has embryonic in situ data for CG31302: 4 pix of staining in 1 body parts.
BioGrid reports that CG31302 interacts with CG9083 .
VDRC has 8 RNAi stocks for FBgn0051302 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain167 ± 94 of 431.60Up
Head20 ± 13 of 4 3.80Up
Eye53 ± 34 of 410.06Up
Thoracicoabdominal ganglion105 ± 84 of 419.90Up
Salivary gland2 ± 00 of 4 0.37None
Crop6 ± 20 of 4 1.30None
Midgut1 ± 00 of 4 0.30None
Tubule2 ± 00 of 4 0.40Down
Hindgut2 ± 10 of 4 0.50None
Heart2 ± 00 of 4 0.40None
Fat body5 ± 30 of 4 1.03None
Ovary0 ± 00 of 4 0.20None
Testis6 ± 01 of 4 1.20None
Male accessory glands3 ± 20 of 4 0.60None
Virgin spermatheca3 ± 10 of 4 0.63None
Mated spermatheca1 ± 00 of 4 0.27None
Adult carcass7 ± 30 of 4 1.30None
Larval CNS57 ± 114 of 410.87Up
Larval Salivary gland1 ± 00 of 4 0.33None
Larval midgut2 ± 00 of 4 0.42None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut3 ± 10 of 4 0.74None
Larval fat body3 ± 10 of 4 0.60None
Larval trachea6 ± 40 of 4 1.17None
Larval carcass2 ± 10 of 4 0.44None
S2 cells (growing)1 ± 00 of 4 0.33None
Whole fly5 ± 10 of 4

Looking for FBgn0262483. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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